Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq6557 134 5e-27 seq4979 95.1 4e-15 >seq6557 Length=877522 Score = 134 bits (148), Expect = 5e-27 Identities = 397/609 (65%), Gaps = 71/609 (12%) Strand=Plus/Plus Query 3971 CCCAGGCAGCCGCGACCATGCGCATGGGCGGCGGCATCGGCTACGACTTCTCCACCCTGC 4030 ||||||| |||| |||||||| || || ||| |||| ||||||||||| | | | Sbjct 124908 CCCAGGCCGCCGAAACCATGCGTCGCGGTGGTGGCGTCGGTTACGACTTCTCTTCGATTC 124967 Query 4031 GCCCCAAGGGCGACCTGATCGTCAAGCT---GCAGTCCCGCAGCTCCGGCCCCATCTCCT 4087 | || |||||| || ||||||| |||||| || ||| |||||| | |||| Sbjct 124968 GTCCGCAGGGCGCCCA---CGTCAAGGGTACGCAGTCGCGTGCCTCGGGCCCCGTATCCT 125024 Query 4088 TCATGGAGATTTTCGACGCGGTC-TGCCGCTGCACGTCCTCGTCCGGCCACCGCCGTGGC 4146 |||| | |||||| || || ||| | | || ||||| ||| |||||| Sbjct 125025 ACATGCGTGTCTTCGAC-CGTTCGTGCGAGACCGTGGAATCCGCCGGCGCCCGTCGTGGC 125083 Query 4147 GCCCAGATGGGCGTCATGCGCATCGACCACCCCGACATCTTCGAGTTCATCCACGCCAAG 4206 || ||||||||||| ||||| ||| || || |||||| | |||||||||||||||| Sbjct 125084 GCGCAGATGGGCGTGCTGCGCTGCGATCATCCGGACATCGAAGTGTTCATCCACGCCAAG 125143 Query 4207 CAGAACGAGCACTTCCTGCGCGGCTTCAATATCTCCATCGCCGTCACCGACGAGTTCATG 4266 | || | | |||| | |||||| || ||||||| ||| ||||| | |||||| Sbjct 125144 GACAAAG---GCGACCTGACCAACTTCAACATTTCCATCGGCGTGACCGATGCCTTCATG 125200 Query 4267 GA----GT-----GCAAGCGGGAC--------GGCAAGCCGTTCC--------AGCTGAA 4301 || || || | | ||| || | |||| || |||||| Sbjct 125201 GAAGCTGTCGATAGCGACAGTGACGTCGAACTGGTACACCGTGCCGAACCCAACGCTGAA 125260 Query 4302 GTGGG----GCGGGCGCGTCTAC---CGCGAGGTCG------------ACCCCAA----- 4337 || | | ||||| |||| ||||||| || ||| ||| Sbjct 125261 ATGCGTTCCTCTGGCGC--CTACCTGCGCGAGGACGGCCTGTGGGTTTACCGCAAAGTGC 125318 Query 4338 -------CGAGCTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCG 4390 ||| |||||| || || ||| ||||||| ||| |||||||||||| Sbjct 125319 GCGCCCGCGACCTGTGGAACCAGGTGATGAAATCCACCTACGACCATGCCGAGCCGGGCA 125378 Query 4391 TCCTGTTCATCGACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGG 4450 |||||||| ||||| ||| ||| ||||| ||| || ||||| | ||| | || Sbjct 125379 TCCTGTTCCTCGACCGCATGAACAAAGACAACAACCTCAATTATTGCGAAGTGATCGAGG 125438 Query 4451 CCACCAACCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTT-GGCTCC 4509 |||||||||| |||| ||||||||| ||||| || | |||| ||| |||||| || || Sbjct 125439 CCACCAACCCCTGCGCCGAGCAGCCCCTGCCCCCCTACGGCTGCTG-CTGCTTGGGATCG 125497 Query 4510 TTCAACCTG 4518 |||||||| Sbjct 125498 ATCAACCTG 125506 >seq4979 Length=1283317 Score = 95.1 bits (104), Expect = 4e-15 Identities = 228/337 (68%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 30844 GGGCTCCAATACGGTTGGGCCTACGGCGAGAACGGCTGGAACGTGGGCATGGACAACAAC 30903 || ||| | ||||| ||| | |||||||| ||||||| || ||||||||| |||| Sbjct 440465 GGACTCAACTACGGCTGGACGCTCGGCGAGAGCGGCTGGGACACCGGCATGGACGCCAAC 440524 Query 30904 CTGCTCCGGCTGGGGCGCTTCGGCGTCCACCTGTCGGTCAAGGACCGCGACCTCGTCACT 30963 || || || || ||| || || |||||| || || |||||||||||| ||| Sbjct 440525 CTCAAGCGCCTCGG-CGCGGTGG--TCGGCCTGTCCGTGAAAGACCGCGACCTCACCACA 440581 Query 30964 CCGCCCGCGACGCCTGCAGACGGCGACACCTACATCGTGGCGGGCGTCGCGACCGACGCC 31023 || || || | ||||| |||||||| |||||||||| | | | || || | | Sbjct 440582 CCACCGGCCAGCCCTGCCAACGGCGACCGCTACATCGTGCCTGCTGCTGCCACGGGTGTG 440641 Query 31024 TGGGTCGGGCAGGA-GGGCCGCGTGGCCGTCTGGTCACAGGCCGACAACGCCTGGGCCTT 31082 |||| | |||| | || | || || || || |||| | ||||||| || Sbjct 440642 TGGG-CAGGCAAAACCAACCAGATCGCGGTGTG--CA-TTGCCG---ATGCCTGGGAGTT 440694 Query 31083 CGCCGTGCCGCGCCTGGGCTGGGTGGCGTACGTTGAGGACGAGGAGAAGCTGACTGCCTA 31142 | | ||| | |||||| | ||| | |||||||||| ||||| | ||||| Sbjct 440695 CCACTCGCCCAAGATCGGCTGGCTTTGCTACATCGAGGACGAGGCCAAGCTCTCGGCCTA 440754 Query 31143 CAAGGCCGCCGGCTGGTCCGCCGGCATTGCCATCTGA 31179 |||| || |||||||| ||| ||||| ||||||||| Sbjct 440755 CAAGTCCACCGGCTGGAGCGCAGGCATCGCCATCTGA 440791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176205090724240