Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq329 176 1e-39 seq2001 111 5e-20 seq775 102 3e-17 >seq329 Length=129497 Score = 176 bits (194), Expect = 1e-39 Identities = 186/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||| ||||| | ||||||||| || || ||||| || || ||||| |||||||||| Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 ||| | | | | || || ||||||||||| | ||| ||| ||| |||||||||| Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | ||||| ||||| ||||| ||| ||| ||||| | ||| |||||| |||||| Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39753 |||||||||| |||||||| ||| || ||||||||| |||| ||||| |||| | Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCGAA 49669 Query 39754 GTCGA 39758 | ||| Sbjct 49668 GACGA 49664 >seq2001 Length=3286380 Score = 111 bits (122), Expect = 5e-20 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 39431 CCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATC 39490 ||| |||| |||||| ||||| | ||| |||||||||| || ||| || ||| Sbjct 2541117 CCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGATG 2541058 Query 39491 ACGTCGCCACGGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCT 39548 || ||||| |||||| ||| |||||| ||||| | |||||| | ||| || || | Sbjct 2541057 ACCTCGCCGCGGCGATC--CATGCAGAAGTCCATGTCGATGTCGGGGAGGGACACACGTT 2541000 Query 39549 CAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCC 39608 | || ||||||||||||||||||| || | || || || ||||| || ||||| | Sbjct 2540999 CCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATGC 2540940 Query 39609 CGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGAC 39660 || ||||| ||| |||| || ||||| || || || || || ||||| Sbjct 2540939 GCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888 >seq775 Length=20816 Score = 102 bits (112), Expect = 3e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||||||| | ||| ||||| || || ||||| ||||||||||| || ||||| | Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || || | | || |||||| | ||||| || || || || |||||||||| Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCATAGGCCACCAGCGAGCC 723 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || || || || ||||| ||| ||||| || ||||||| ||||| Sbjct 724 CGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGAA 783 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39729 || ||||| ||||||||| |||||| ||||| Sbjct 784 ATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCAT 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160222805847400