Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq4979 260 7e-65 seq2001 165 4e-36 seq2100 87.8 9e-13 >seq4979 Length=1283317 Score = 260 bits (288), Expect = 7e-65 Identities = 555/826 (67%), Gaps = 7/826 (1%) Strand=Plus/Minus Query 66096 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66155 ||||| || ||| | |||| || |||||| |||| || ||| | |||||||| Sbjct 188377 ACCGGTTCCCTCGGTTTGGATATTGCGCTGGGCGTCGGTGGCCTGCCGCGTGGCCGGGTT 188318 Query 66156 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66215 || |||||||| || || ||||| || || ||| | || || || || || | || ||| Sbjct 188317 GTCGAAATCTATGGTCCGGAATCGTCCGGCAAGACCACGCTCTGCCTGCAGGTCGTCGCC 188258 Query 66216 --AATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACC 66273 ||||| ||||| ||| || ||||||| || || || || || | || || | Sbjct 188257 GAAATGC--AGAAGCTCGGCGGGGTTGCTGCCTTTATTGATGCCGAACATGCGCTCGATC 188200 Query 66274 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 66333 | | || ||| || ||||| || | ||| | |||| || | || ||||| | Sbjct 188199 CGCAATATGCCCAGAAACTCGGCGTCAATGTCGGCGACCTGCTGATCTCGCAACCGGATA 188140 Query 66334 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCG 66393 | ||||| ||||| || || |||| ||| | || || ||| || | | |||| Sbjct 188139 CCGGCGAACAGGCGCTCGAAATCGCCGACATGCTGGTGCGGTCCGGGTCGGTCGACATCA 188080 Query 66394 TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 66453 | ||| ||||||| ||||| || || ||||| ||||| |||| ||||| || || | Sbjct 188079 TTGTCATTGACTCCGTGGCCGCGCTCACCCCGCGTGCCGAAATCGAGGGCGAGATGGGCG 188020 Query 66454 ACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCA 66513 || || || ||||| || ||||| ||| ||||| |||||||||| |||| || Sbjct 188019 ACCAGATGGTTGGGCTGCATGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCA 187960 Query 66514 CCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCA 66573 |||| | ||||| |||||| ||| |||||||| | ||| ||||||||| Sbjct 187959 ACATCAAGAAGACCAATACGCTGGTTGTCTTCATCAACCAGATCCGCATGAAGATCGGTG 187900 Query 66574 ACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCT 66633 | || | |||| || || |||||||| || ||||| || | | ||| ||||| | Sbjct 187899 TCATG---TTCGGCTCGCCGGAAACCACCACCGGTGGCAATGCGCTCAAGTTTTACGCTT 187843 Query 66634 CAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 66693 | || ||| | || | || || |||| | | ||| | ||||| || | | |||||| Sbjct 187842 CGGTGCGCCTCGACATTCGCCGTATCGGCGCGATCAAGAAGGGCGACGAAGTTATCGGCA 187783 Query 66694 ACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGT 66753 | ||| ||| |||||||||||||||||| | || || || |||| | ||| | Sbjct 187782 GCGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCGCCCCCCTTCCGCGAAGCCATCT 187723 Query 66754 TCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGT 66813 || | || | ||||| ||||| ||||| || ||| |||| || |||| ||| || Sbjct 187722 TCGACATCCTCTACGGTGAGGGAATCTCCCGACAGGGCGAAGTCGTCGAAATGGGTGTCG 187663 Query 66814 CGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCC 66873 |||| ||||| | || || || ||||||| | ||| || | |||| | | || Sbjct 187662 CGCACAAGCTGGTCGACAAATCAGGTGCCTGGTACGCCTACAAGGGCGAGAAAATTGGCC 187603 Query 66874 AGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACAT 66919 |||||||| ||| ||| | ||| |||||||| |||| || || Sbjct 187602 AGGGCAAGGACAATGCCCGCGAGTTTCTCAAGGCACACCCAGAGAT 187557 >seq2001 Length=3286380 Score = 165 bits (182), Expect = 4e-36 Identities = 429/647 (66%), Gaps = 9/647 (1%) Strand=Plus/Plus Query 66112 TGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCC 66171 ||||| ||| || || ||||||| | ||| | || |||||| | || || | |||| Sbjct 2301338 TGGACATCGCGCTCGGAGTCGGGGGCTTGCCGCGCGGACGGGTGATTGAGATTTTTGGCC 2301397 Query 66172 CAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCCCAGAAGGCCG 66231 | || || || || ||| | || || ||||| | ||| | | |||||| ||| Sbjct 2301398 CGGAGTCGTCCGGCAAGACGACGATGACGCTCCATTGTATTGCCGAGGTTCAGAAGACCG 2301457 Query 66232 GTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAG-TACGCCAAGGCG 66290 | ||| || |||| |||||| || || || ||||||| ||| || ||| | | Sbjct 2301458 GCGGCGTGGCGGCCTTCATCGATGCGGAACATGCCCTGGATT-TGACCTATGCCCAAAAG 2301516 Query 66291 CTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTG 66350 || || ||| | || | | | ||| |||||||| || |||||||||||| || Sbjct 2301517 CTGGGAGTGCAGGCAGATGAGTTGCTTGTGTCCCAGCCGGATACCGGCGAGCAGGCCTTG 2301576 Query 66351 GAGATCGTTGACCTCCTCGTCA--AGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTG 66408 || |||| ||| || || ||| |||| | | || | |||| || || || | Sbjct 2301577 GAAATCGCTGAGACGCTGGTTCGCAGTGGAGCGATC-GACC-TGATCGTGGTGGATTCGG 2301634 Query 66409 TGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCC 66468 | || || || ||| || || || |||||||||| || || || ||| | ||| Sbjct 2301635 TCGCCGCGCTCACGCCACGGGCTGAAATCGAAGGCGAAATGGGCGATTCTCATATGGGCT 2301694 Query 66469 TGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCA 66528 |||| ||||| ||||||||||||||| |||| ||||| || | | ||||| | | Sbjct 2301695 TGCAGGCGCGGCTCATGTCGCAGGCCTTGCGTAAGCTGACGGCTGCTATCTCGAAGTCTC 2301754 Query 66529 ACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCC 66588 | ||| | | | |||||||| | ||| |||||| || ||| | |||| Sbjct 2301755 AGACGACATTGATTTTCATCAACCAGATCCGCATGAAGATTGG---GGTGATGTTCGGCA 2301811 Query 66589 CGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATG 66648 ||| ||||| || ||||| || || |||| |||||| |||| || ||| | ||| Sbjct 2301812 ATCCCGAAACCACGACCGGCGGGAATGCGTTGAAGTTCTATTCCTCGGTTCGCCTTGATA 2301871 Query 66649 TCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGA 66708 | || ||||||| | | || || || | || | | || ||||| ||||||| Sbjct 2301872 TTCGCCGCATCGAGTCTGTAAAAGAGGGGCAGGATGTGATGGGGAACCGGGTGCGGGTGA 2301931 Query 66709 AGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTC 66755 |||||||||| |||||| |||| |||||| ||| | || |||||| Sbjct 2301932 AGGTCGTCAAAAACAAGATGGCGCCGCCGTTTCGCCAGGCGGAGTTC 2301978 >seq2100 Length=6174 Score = 87.8 bits (96), Expect = 9e-13 Identities = 182/271 (67%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 66091 TTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCC 66150 || ||||||| || | | || ||| ||| ||||| | || || ||| | |||| Sbjct 289 TTTCCACCGGGTCCCTGGGGCTTGACATCGCCCTGGGAGTGGGCGGCCTGCCGCGCGGCC 230 Query 66151 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGG 66210 | ||||| |||||||||||||| |||||||| || ||| | || || || || | | Sbjct 229 GCGTGGTCGAAATCTACGGCCCGGAATCTTCGGGCAAGACCACGCTCACGCTGCAGGTGA 170 Query 66211 TGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGG 66270 | ||| | || ||| ||| ||| |||| |||||| || || ||| | || | Sbjct 169 TCGCCGAGATGCAAAAGCTCGGCGGCGTGTGCGCCTTCATCGATGCCGAACACGCGCTCG 110 Query 66271 ACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGG 66330 | | | ||||| | |||||| ||| |||| | |||| | | ||||| | Sbjct 109 ATACGCAATACGCGCAAAAGCTCGGCGTGAACCTGCAAGACCTGCTCATCAGCCAGCCCG 50 Query 66331 ACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 |||| ||||||||||| ||||| ||||| || Sbjct 49 ACACCGGCGAGCAGGCACTGGAAATCGTCGA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240933463978800