Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3957 136 9e-27 seq61 118 3e-21 seq2044 116 9e-21 seq2001 107 5e-18 seq2128 104 6e-17 seq6036 102 2e-16 seq1887 102 2e-16 seq112 102 2e-16 seq5696 100 7e-16 seq2991 100 7e-16 seq5381 96.9 8e-15 seq862 93.3 1e-13 seq939 91.5 4e-13 seq1112 89.7 1e-12 seq8258 87.8 4e-12 seq1246 87.8 4e-12 seq3276 86.0 1e-11 seq2446 84.2 5e-11 >seq3957 Length=668572 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | ||||| || | ||| || | ||||| || ||||| || |||||||||| Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | ||||| || || || || ||||| || || |||||||||||||| ||||||| | Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| |||||||| | || || ||||| || || ||||| || || || ||||||| || Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 225704 ACACTTGCATTTT 225716 | | |||||||| Sbjct 478696 AGATCTGCATTTT 478684 >seq61 Length=49786 Score = 118 bits (130), Expect = 3e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || |||||| | || || ||||| ||| |||| ||||||||| | || || Sbjct 38803 CCAAATTTATAATGTTATTGTAACTGCTCATGCTTTTATTATAATTTTCTTTATAGTAAT 38744 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || || |||||| | || || ||||| | ||||||||||| Sbjct 38743 ACCTATTATAATTGGAGGATTTGGTAATTGACTAGTACCATTAATATTAGGTGCTCCTGA 38684 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718 ||| ||||| || | | || |||||||| |||||| |||| || || Sbjct 38683 TATAGCTTTCCCGCGTATAAATAATATAAGATTTTGACTACTCCCTCC 38636 >seq2044 Length=12966 Score = 116 bits (128), Expect = 9e-21 Identities = 102/126 (81%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||||||||||||||| | | | | Sbjct 6262 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGCCCC 6203 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| ||||||||||||| | ||||||| |||| | | |||| || ||| || ||||| Sbjct 6202 CGTCAATTTCTTTGAGTTTCAGCCTTGCGACCGTACTCCCCAGGCGGGATACTTAACGCG 6143 Query 7856 TTAGCT 7861 |||||| Sbjct 6142 TTAGCT 6137 >seq2001 Length=3286380 Score = 107 bits (118), Expect = 5e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | | Sbjct 2266050 GGTAAGGTTCTTCGCGTTGCGTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 2265991 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||| |||||||||| |||| | | |||| || ||| ||| ||| Sbjct 2265990 CGTCAATTCCTTTGAGTTTCAACCTTGCGGCCGTACTTCCCAGGCGGGATACTTATTGCG 2265931 Query 7856 TTAGCT 7861 |||||| Sbjct 2265930 TTAGCT 2265925 >seq2128 Length=5974 Score = 104 bits (114), Expect = 6e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 7727 TTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTA 7786 |||||| | |||||| ||| | |||| ||| ||||||||||||| ||||||||||| Sbjct 4694 TTCTAGCCTAGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTG 4753 Query 7787 TACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 | | | |||||| || |||||||||| ||||||||||||||| | | ||||||| Sbjct 4754 TGCGGACCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGTGG 4810 >seq6036 Length=8020 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 6066 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 6125 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 6126 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTTCCCAGGCGGGATACTTAACGC 6185 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 6186 GTTAGCTT 6193 >seq1887 Length=9975 Score = 102 bits (112), Expect = 2e-16 Identities = 99/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||||||||||||||| | | | | Sbjct 2767 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGCCCC 2708 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || ||||||||||||| |||||| |||| | | |||| || | || | ||| Sbjct 2707 CGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGTGAACTTAATGCG 2648 Query 7856 TTAGCT 7861 |||||| Sbjct 2647 TTAGCT 2642 >seq112 Length=422422 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||||| |||||| || || ||||| ||| |||||| |||||| ||||||||| Sbjct 161779 ATGTCAAGGGTAGGTAAGGTTTTTCGCGTTGCATCGAATTAATCCACATCATCCACCGCT 161838 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | |||||| || ||||||||||||||||||||| |||| | | |||| || Sbjct 161839 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 161898 Query 7844 AATATTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 161899 CAACTTCACGCGTTAGCT 161916 >seq5696 Length=3258 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || || |||| || ||||||||||||| ||||||||||| | | Sbjct 2456 TGGTAAGGTTTTTCGCGTATCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 2397 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| |||||||||||||||| |||||| |||| |||||||| ||| | || | || Sbjct 2396 CCGTCAATTTCTTTGAGTTTTAATCTTGCGACCGTACTACTCAGGCGGAGTGCTTAATGC 2337 Query 7855 GTTAGCT 7861 ||||||| Sbjct 2336 GTTAGCT 2330 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| | ||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 1792 TGAGAGGAAGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 1850 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| |||| || ||||||||| |||| | ||||| || |||| ||||| Sbjct 1851 CAGTGGGGAATTTTGGACAATGGGGGAAACCCTGATCCAGCAATGCCGCGTGA 1903 >seq2991 Length=7064 Score = 100 bits (110), Expect = 7e-16 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||||| |||||| || || ||||| ||| |||||| |||||| |||||||||| Sbjct 494 ATGTCAAGGGTAGGTAAGGTTTTTCGCGTTGCATCGAATTAATCCACATCCTCCACCGCT 435 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | |||||| || ||||||||||||| |||||| |||| | | |||| || Sbjct 434 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGT 375 Query 7844 AATATTTACGCGTTAGCTTAATTAATA 7870 | || |||||||||||| ||| || Sbjct 374 CAACTTCACGCGTTAGCTTCGTTACTA 348 >seq5381 Length=4748 Score = 96.9 bits (106), Expect = 8e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| |||| |||||| | | | | Sbjct 671 GGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCTCCGCTTGTGCGGGCCCC 612 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||| ||||||||| ||||| | | |||||||| | ||| ||| Sbjct 611 CGTCAATTCCTTTGAGTTTCAACCTTGCGATCGTACTCCCCAGGTGGATAACTTATCGCT 552 Query 7856 TTAGCTTA 7863 || ||||| Sbjct 551 TTCGCTTA 544 >seq862 Length=13664 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||||| |||||| || || ||||| ||| |||||| |||||| ||||||||| Sbjct 12182 ATGTCAAGGGTAGGTAAGGTTTTTCGCGTTGCATCGAATTAATCCACATCATCCACCGCT 12241 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | |||||| || ||||||||||||| |||||| |||| | | |||| || Sbjct 12242 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGC 12301 Query 7844 AATATTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 12302 GAACTTCACGCGTTAGCT 12319 >seq939 Length=11213 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 7727 TTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTA 7786 |||||| | |||||| ||| | |||| ||| ||||||||||||| ||||||||||| Sbjct 7064 TTCTAGCCTAGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTG 7005 Query 7787 TACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT 7846 | | | |||||| || |||||||||| | | |||| | |||| | | |||||||| | Sbjct 7004 TGCGGACCCCCGTCAATTCCTTTGAGTTTCACCGTTGCCGGCGTACTCCCCAGGTGGATT 6945 Query 7847 ATTTA 7851 | ||| Sbjct 6944 ACTTA 6940 >seq1112 Length=3255245 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||| || || ||||| || || | |||||| |||| | || | Sbjct 2620694 AGTCTGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGG 2620753 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| || |||||||| | || || ||||| || || || |||||| Sbjct 2620754 CCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCC 2620813 Query 225616 TTGTCTTGGATCTT 225629 ||||| ||||| || Sbjct 2620814 TTGTCCTGGATTTT 2620827 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||| || |||||||| || || | |||||| || | | || | Sbjct 2622951 AGTCTGAGAACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAGAGTGTGCGG 2623010 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| || |||||||| | || || ||||| || || || |||||| Sbjct 2623011 CCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCC 2623070 Query 225616 TTGTCTTGGATCTT 225629 ||||| ||||| || Sbjct 2623071 TTGTCCTGGATTTT 2623084 >seq8258 Length=2548 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||||||||| ||||||||||||||| |||||||||||||||| || || | | || | | Sbjct 1394 ACAGAATAGGTGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCAAACTCGCAAGAGG 1453 Query 372690 ATGTATAGGGTCTGAC 372705 | |||||||||||||| Sbjct 1454 AAGTATAGGGTCTGAC 1469 >seq1246 Length=14010 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| ||| |||||| | | | | Sbjct 9491 GGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGTTCCTCCGCTTGTGCGGGCCCC 9432 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 ||||| || |||||||||| ||||||||| ||||| | | |||||||| Sbjct 9431 CGTCAATTCCTTTGAGTTTCAACCTTGCGATCGTACTCCCCAGGTGGA 9384 >seq3276 Length=5507 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 7727 TTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTA 7786 |||||| | |||||| ||| | |||| ||| ||||||||||||| ||||||||||| Sbjct 823 TTCTAGCCTAGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTG 764 Query 7787 TACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT 7846 | | | ||| || || |||||||||| | |||||| |||| | | |||||||| | Sbjct 763 TGCGGACCCCCGCCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTTCCCAGGTGGATT 704 Query 7847 ATTTA 7851 | ||| Sbjct 703 ACTTA 699 >seq2446 Length=1160753 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || |||||||| || | || ||||| | | || | ||||| Sbjct 439673 AGGACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAGAGTGTGCGGCCATCC 439614 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| ||||| || || || ||||||||||| || ||||| ||| Sbjct 439613 TCGAGCTGCTTGCCAGCAAAAATCAGCCGTTGTTGGTCAGGGGGAATGCCT 439563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192393136190984