Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1224 156 3e-33 seq112 96.9 3e-15 >seq1224 Length=1352561 Score = 156 bits (172), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 29711 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29770 || ||||| |||| ||| || | |||||| ||||| ||||||||||| || ||||| || Sbjct 1087475 TCGAGCCCAGTGATGTGTGCAAGCATGTATGTGAGCAGAGAGTAGCTAGCAATGTTGAAC 1087534 Query 29771 GGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG--- 29827 ||||||||||| |||||||| |||| | |||||| | ||| |||||||| | | | Sbjct 1087535 GGCACCCCGAGGCCCATGTCTGCTGAACGCTGGTACATCTGACACGAGAGATAGCGGCGC 1087594 Query 29828 TCGCTCACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTC 29886 ||| |||||| ||||| ||| | || ||||| || || || |||||| |||| ||| Sbjct 1087595 TCGGCCACGTAGAACTG-CACCAGACAGTGGCAGGGGGGCAGAGCCATGGCCCCCAGGTC 1087653 Query 29887 TTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTG 29932 ||| ||||| |||| || ||||||||| | ||| ||||| ||| Sbjct 1087654 AGCGGGATTCCAAGCACTCATGATGATGCGTCGGTCATCTGGATTG 1087699 >seq112 Length=422422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 186/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTC-TAGCCCGGTGACGTG 29727 |||| ||| || || || | |||||| || ||||| ||||| | ||||| | | || Sbjct 128878 TAGAGGTGCGCGTCGCCGAAGGTGTGCACGAACTCGCCCGGCTGGTAGCC-GCAAATCTG 128936 Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787 ||| | ||| ||| | || | |||| ||| ||||| ||||| || || || || Sbjct 128937 AGCGAGCATCATCGTAAACAGGGCGTAGGAGGCAATGTTGAAGGGTACGCCCAGAAAGAT 128996 Query 29788 GTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 ||| | ||| | ||||||||||||||| || ||| |||||| || || ||||| Sbjct 128997 GTCGGCGCTG--CGCTGGTAGAGCTGGCAGGACAGCCTGCCGTCGGCGACATAGAACTGG 129054 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||| | |||||| || || ||||||||| | | | || |||||||||||| | Sbjct 129055 AACAGGCAATGGCAGGGCGGTAGGGCCATGTGCTCGACATCGCCGGGGTTCCAGGCCGAA 129114 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTC 29935 |||||| || | | || ||||||||| Sbjct 129115 ACGATGTGCCGGCGGGAGTCCGGGTTGTTC 129144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406118470769896