Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq450 161 3e-35 seq6557 116 1e-21 seq2001 91.5 5e-14 seq6624 86.0 2e-12 >seq450 Length=27002 Score = 161 bits (178), Expect = 3e-35 Identities = 237/328 (72%), Gaps = 12/328 (4%) Strand=Plus/Plus Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGA 34047 |||||||| ||||| ||||||| | |||||||||||| | | || | |||| || Sbjct 21208 CCGTTGCGCTGCTTGCCGATGATGATCTCAGCCACGCCCGGCTCCTTCGAGTCCTTGTTG 21267 Query 34048 TAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGAC 34107 ||| |||||| ||||| | |||||||||||||||||| ||||| ||||| || || || Sbjct 21268 TAGTACTCGTCGCGGTAGATGAACATGATCACGTCGGCATCCTGTTCGATGGCGCCCGAT 21327 Query 34108 TCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGC 34167 || |||||||| ||||||||| ||||||| |||||| ||||| |||||||| | Sbjct 21328 TCCCGCAGGTCACTCATCATCGGGCGCTTGTCGGGCCGCGTCTCCACCGAGCGGTTCAAT 21387 Query 34168 TGCGACAGCACGATCA-CGGGGATACCAAGCTCCATGGCCAGTAGCTTGCA-CTGGCGGG 34225 ||||||| | |||| ||| || ||| ||| ||||||| | || || | ||| | Sbjct 21388 TGCGACAAGGCAATCACCGGACATTGCAA-TTCCTTGGCCAG-CGATTTCAGCCCGCGCG 21445 Query 34226 ACATGTCGCTGA-CGTCCTCGGTGCGAGTTGACT------TGCCGGAGCTCTCCAGCAAC 34278 | || |||| || |||| || | || || || ||| |||| || || Sbjct 21446 AGATTTCGCCGATCGTCGTC-GCCCGGTTTTCCTCGTTCGTGCTCGAGCCGCTCATCAGT 21504 Query 34279 TGCAGGTAGTCCACCACCAGCAGGCTCA 34306 ||||||||||| ||||||| ||||| || Sbjct 21505 TGCAGGTAGTCAACCACCACCAGGCCCA 21532 >seq6557 Length=877522 Score = 116 bits (128), Expect = 1e-21 Identities = 258/382 (68%), Gaps = 9/382 (2%) Strand=Plus/Minus Query 33928 GCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGCTTGGCTCG 33987 ||||| | ||||| |||| ||||| ||| ||||| || || ||||||| | | | Sbjct 46376 GCGAGATTGTCGAAGCGCGTGTACTCACCGAGGAAGGCTAGGCGAACAGTGCCGGTCGGG 46317 Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGA 34047 ||||| || ||||| |||| |||| || || | ||| || | || || || | Sbjct 46316 CCGTTACGCTGCTTGCCGATAATCACTTCGGCGATGCCCTTGTCGGGCGTATCGGGCTTG 46257 Query 34048 TAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGAC 34107 ||| || || ||||||| | || || ||||| || |||||||| || || ||||| Sbjct 46256 TAGTATTCCTCGCGGTACATCATCAAAATAACGTCTGCATCCTGCTCAATGGCGCCGGAT 46197 Query 34108 TCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGC 34167 ||||||||||| ||||||||||| ||||||| |||| ||| | ||| ||| Sbjct 46196 TCGCGCAGGTCGGACATCATCGGACGCTTGTCGTTGCGCTCCTCGACCTTGCGCGACAGC 46137 Query 34168 TGCGACAGCACGATCACGGGGATACC--AAGCTCCATGGCCAGTAGCTTGCACTGGCGGG 34225 |||||||| ||| | || |||| | |||| ||||||| |||| | || | Sbjct 46136 TGCGACAGGGCGACGATCGG--TACCTGTAACTCCTTGGCCAGCGACTTGATCGAACGCG 46079 Query 34226 ACATGTCGCTGACGTCCTCGGTGCGAGTTGACT---TGCCGG-AGCTCTCCAGCAACTGC 34281 | || ||| ||| ||| || || ||| || |||||| || || |||||| Sbjct 46078 AGATATCGGAGACTTCCGTGGCCCG-GTTCTCTCCCTGCCGGTTGCCGCTCATCAACTGG 46020 Query 34282 AGGTAGTCCACCACCAGCAGGC 34303 | |||||| | ||| | ||||| Sbjct 46019 ATGTAGTCGATCACGATCAGGC 45998 >seq2001 Length=3286380 Score = 91.5 bits (100), Expect = 5e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGA 34047 ||||| || ||||| |||||| | |||||| | ||| || | || | ||| | Sbjct 1539294 CCGTTTCGATGCTTGCTGATGATAATCTCAGCAATGCCTTTTCGCTCAGAGTTCTGGTCA 1539235 Query 34048 TAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGAC 34107 ||||| || || || || | ||||||| |||||||||||||||||||||||| ||||| Sbjct 1539234 TAGACATCTTCGCGATAGATAAACATGACCACGTCGGCGTCCTGCTCGATCGCGCCGGAT 1539175 Query 34108 TCGCGCAGGTCCGACATCATCGG 34130 || |||| ||| | || ||| || Sbjct 1539174 TCACGCAAGTCGGCCAGCATGGG 1539152 >seq6624 Length=42116 Score = 86.0 bits (94), Expect = 2e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 11203 ATGCTGGTCATCAACGAGTCAGGGCTGTACTCGGCGATCCTGCGCAGCCGCAAGGCCGAG 11262 ||| || |||| ||||||||| || ||| | |||| | |||||| |||| || | Sbjct 21915 ATGGTGATCATTTCCGAGTCAGGCCTTTACACCCTGATCATCCGCAGCAACAAGCCCCAA 21974 Query 11263 GCCAAGCGCTTCAAGAAGTGGGTAACCGCCGAGGTGCTTCCTGCGATTCGCAAGCATGGT 11322 ||||||| |||| |||||||| || ||||||||||| || |||| |||||||| || Sbjct 21975 GCCAAGCCCTTCCGCAAGTGGGTGACTGCCGAGGTGCTGCCCTCGATCCGCAAGCACGGC 22034 Query 11323 CGCTATG 11329 ||||| Sbjct 22035 TTCTATG 22041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160446781811640