Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1514 262 5e-65 seq2057 91.5 2e-13 >seq1514 Length=8380 Score = 262 bits (290), Expect = 5e-65 Identities = 615/917 (67%), Gaps = 26/917 (3%) Strand=Plus/Minus Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| ||||| || ||||| || || | ||| || ||||| || |||| |||||| Sbjct 4049 ATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATGGTGCCAAGGTTTTTTTGGTT 3990 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 || || ||| || || ||| | || || | || || || ||||| || || Sbjct 3989 ACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGTGTGCCAGTTTCCATTTGGCT 3930 Query 77843 TTCGATAATAGATTTC----CAGACGACTCTAGCTTTTATCATAGATTT--GTA--TCGC 77894 ||| | | ||||| || | | || ||||||| | | ||| ||| | | Sbjct 3929 TTCCA----ATATTTCAAACCATAAGTCTTGGGCTTTTACCGT---TTTACGTACTTTTC 3877 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 || |||||||| || | || || ||| ||||||| | || || | ||| |||| Sbjct 3876 CT-TCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCCATAGCAATCGGCCAAG 3818 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCA---GTCACCATCTTCCTTAACTCGTTTC 78011 || |||||||| || |||||||| | ||||| ||| ||||||| || || ||| Sbjct 3817 CCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATCTTCC---ACCCGCTTC 3761 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTT 78071 ||||| | |||||||||||| | || ||| ||||| || | | |||||| || Sbjct 3760 ATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACGCATTTCTTCTTTA 3701 Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 || || || || | | | || ||| | || ||| | |||||| || || | |||| Sbjct 3700 CCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCAAGGCTCCAAATAT 3641 Query 78132 ATTGCCA-TAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 || || | | | || | || || |||||||||||||| ||| | ||||| | ||| Sbjct 3640 ATGGCAAATGAGCCCTTG-CGCTTGCCACCTCCCTGATCTACATAGCGAGCGGTATCATT 3582 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 | || | ||||||||| || || ||||| || || |||||||| || ||||| Sbjct 3581 GAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACCTTTTATATACGA 3522 Query 78251 TCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAG 78310 ||| | || | | |||| ||| || || || || || ||| | |||||| Sbjct 3521 ACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGATTGTGATATTTT 3462 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG-TTAAGAA 78369 || || | || ||||||||||| ||||| ||||| ||| || ||||| |||| || Sbjct 3461 GGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTTCATGGTTAATAA 3402 Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 ||| || || | || | | || |||||||| |||||||| |||| |||| Sbjct 3401 -AAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGTGGGAGTGGCAT 3343 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 | ||||||||| || ||||||| ||| || |||||||| || || || || || Sbjct 3342 GGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGAGTCGATATCTATAC 3283 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 |||||| ||||| ||||||||||| | ||||||||| || | ||| | | || || Sbjct 3282 CATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTCTGCTATATTTCCAT 3223 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 ||||| || | ||||||||||| | |||||||| |||||||| | || ||| | Sbjct 3222 CAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATAATCATAACCAAAAT 3163 Query 78610 CTCTCTCGTAAATAATA 78626 |||| || || || ||| Sbjct 3162 CTCTATCATATATTATA 3146 >seq2057 Length=842785 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 76858 AGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACT 76917 |||| |||||| || ||||| ||| | || || || ||||||||||||| || Sbjct 605927 AGAAGTGCATGGACGTTAGTTTTCCATAGTTTGGCTCAGCAATATGAATATTCAGACTCT 605986 Query 76918 GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAA 76977 ||||||| || ||| ||||||||| |||||| ||||| | ||| || ||| |||| | Sbjct 605987 GACTTTGGTCAATGTAAGCTCCTCGATCAGCTGCCATCTCTATGATACGCTTCTGAGATA 606046 Query 76978 TTTCCCAAATAGTTTTGAAAACTTGTTT 77005 | ||||| | ||| ||| ||| || ||| Sbjct 606047 TCTCCCACACAGTCTTGTAAAGTTCTTT 606074 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || |||||||| ||| | |||||| | ||||| ||||||||||| | Sbjct 608323 TCAAACTCCTCTCCCCAGCAGTCAGAAAGTCCAGGACTTTCATGAGGGCACATCAAACTC 608382 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | |||| || || | | ||| || ||||| || ||||| | ||| || Sbjct 608383 CATACCCCATTGCTCTCGACCCTCTGCATGAACAGATCTGGGATCCACAAGGCATAGAAC 608442 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||||| | || ||| || || || || || || || || || || || || | Sbjct 608443 AGATCTCTAGCTCGCACTTCCTCCTTGCCAGTGTTTTTCTTTAGGTCCAGGAATTCAAAG 608502 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 || || | ||||||||| || ||||| ||||| | | |||||||||| Sbjct 608503 ATGTCTGCATGCCATGGCTCAAGATAAATTGCAAAAGCTCCAGGTCG 608549 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || ||| || || |||||||| || || || || || ||||||||||| | Sbjct 611098 CACCACTGAAGGTTTTCTTGGTCTCCTTGTGAAGGTTGGAGACTGCAATTCTTGCAGCAA 611157 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | | ||||||||||||||||| || || |||||| || | || || || || | | Sbjct 611158 GCACAGCATAATCAGGATGTTTGGTGGTGAGAGTGGCAGCAGTCTCAGCTGCCAAGTTGT 611217 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCC 78892 | | ||||| ||||| || ||| || ||||| Sbjct 611218 CAAGCTCTACGGTTGTCACTCCAGGGTAAAGTCC 611251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694590337159040