Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1514 224 1e-53 seq1813 104 3e-17 seq2057 96.9 5e-15 seq324 91.5 2e-13 >seq1514 Length=8380 Score = 224 bits (248), Expect = 1e-53 Identities = 492/733 (67%), Gaps = 8/733 (1%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||| || |||| || | | ||||||| | || || | ||| |||| || Sbjct 3874 TCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCCATAGCAATCGGCCAAGCCT 3815 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACC---ATCTTCCTTAACCCGTTTCATA 76609 || ||||| || || ||||| | ||||| | | ||||||| ||||| |||||| Sbjct 3814 GGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATCTTCC---ACCCGCTTCATA 3758 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || | |||||||||||| | || ||| ||||| || | | |||||| || || Sbjct 3757 AATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACGCATTTCTTCTTTACCG 3698 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || || || | | | | ||| | || ||| | |||||| || || | |||||| Sbjct 3697 TGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCAAGGCTCCAAATATATG 3638 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | ||| || || |||||||||||||| ||| | || || | ||| | Sbjct 3637 GCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGCGAGCGGTATCATTGAAT 3578 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || | ||||||||| || |||||||| || || |||||||| || ||||| ||| Sbjct 3577 ACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACCTTTTATATACGAACCA 3518 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 || | | |||| || |||||| || || || ||| || || ||| ||| Sbjct 3517 GTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGATTGTGATATTTTGGCA 3458 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATG-TTAAGAAGAAA 76968 || | || ||||| || || || || ||||| || || ||||| |||| || ||| Sbjct 3457 CATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTTCATGGTTAATAA-AAA 3399 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 || || | || | | || |||||||| || ||||| |||| ||||| || Sbjct 3398 GCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGTGGGAGTGGCATGGGT 3339 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATG 77088 |||||| || ||||||| ||| || |||||||| | | || ||||| ||| Sbjct 3338 AAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGAGTCGATATCTATACCATG 3279 Query 77089 AATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTAT 77148 ||| |||||||| |||||||| | ||||||||| || |||||| | | || || || Sbjct 3278 AATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTCTGCTATATTTCCATCAAT 3219 Query 77149 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 77208 ||| || | ||||||||||| | |||||||| |||||||| | || ||| ||||| Sbjct 3218 TTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATAATCATAACCAAAATCTCT 3159 Query 77209 TTCGTAAATAATA 77221 || || || ||| Sbjct 3158 ATCATATATTATA 3146 >seq1813 Length=735787 Score = 104 bits (114), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| ||| ||| | || ||| ||||| || |||||||| ||||||||||| || Sbjct 440301 TCATCCCTAGAAATGAGCTCATTACTGAATGTCAGACCAGGCATCAGTCCACGCTTCTTT 440242 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || || || || ||| || ||||| ||||| || || || || || || Sbjct 440241 AGCCAGAAAATGGCAGCAAAGCTTCCTGAGAAGAAGATGCCCTCGACTGCTGCAAACGCC 440182 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTTGAGCCCAATCAGCC 46830 || | || || || || ||||| || ||| |||||| ||||||| || ||| Sbjct 440181 ACGACTCGTTCACCATAGGTGGCAGAATCATGCGAAATCCAGTCCAGAGCCCAGTCTGCC 440122 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || |||| ||||| ||||| || || || || || || Sbjct 440121 TTCCTCTTCACACACGGCATGGTCTCAATGGCGTTGAA 440084 >seq2057 Length=842785 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 75453 AGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACT 75512 |||| |||||| |||||||| ||| | || || || ||||||||||||| || Sbjct 605927 AGAAGTGCATGGACGTTAGTTTTCCATAGTTTGGCTCAGCAATATGAATATTCAGACTCT 605986 Query 75513 GACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAA 75572 ||||||| || ||| ||||||||| |||||| ||||| | ||| || ||| |||| | Sbjct 605987 GACTTTGGTCAATGTAAGCTCCTCGATCAGCTGCCATCTCTATGATACGCTTCTGAGATA 606046 Query 75573 TTTCCCAAATAGTTTTGAAAACTTGTTT 75600 | ||||| | ||| ||| ||| || ||| Sbjct 606047 TCTCCCACACAGTCTTGTAAAGTTCTTT 606074 >seq324 Length=1196970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 94341 TTTCCAGACATAGTAGAATTTTGTGAACTTATGGCCAACAATGGAAAAATAGTTATAGTA 94400 |||||||||| ||||| |||||||| | ||||| || | || ||| | ||| |||| Sbjct 298456 TTTCCAGACACTGTAGAGTTTTGTGAGTTGATGGCTGACCAGGGTAAAGTGGTTGTAGTG 298397 Query 94401 GCTGCATTAGATGGAACGTTTCAACGCAAGCCCTTTACCACCATTTCTAATCTCATTCCG 94460 |||||||| ||||| || | |||||| | |||| | || | | || |||| Sbjct 298396 GCTGCATTGGATGGTACCTACCAACGCCAAGGCTTTGGAAATATCCTTCAGCTGGTTCCT 298337 Query 94461 TTATCTGAAATGGTGGTGAAACTAACAGCCGTATGTATGAAATGCttt 94508 || | |||| |||| |||||| || || || ||||||||||||||| Sbjct 298336 TTGGCAGAAAGTGTGGAGAAACTTACTGCAGTGTGTATGAAATGCTTT 298289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712853874059520