Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq3574 86.0 9e-12 seq112 86.0 9e-12 >seq3574 Length=6226 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 99893 CATTGACCAAATCTCCAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCAT 99952 ||| ||||| || || |||| | | ||| | | || | |||| ||| || ||||| Sbjct 2961 CATCGACCAGATGGCCGAGGTGGTGAAGCAGCTCAGAACCAACCCCGATTCGCGGCGCAT 3020 Query 99953 TATTGTCAGTGCATGGAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGC 100012 || ||||| || |||||||| ||||| || || | |||||| | | ||| |||||||| Sbjct 3021 CATCGTCAGCGCCTGGAACGTGGCCGAACTGCACAAGATGGCCCTGGTGCCCTGCCATGC 3080 Query 100013 GTTCTTCCAGTTCTA 100027 |||||||||||||| Sbjct 3081 CTTCTTCCAGTTCTA 3095 >seq112 Length=422422 Score = 86.0 bits (94), Expect = 9e-12 Identities = 169/245 (69%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 99524 CGACCGTACTGGCACTGGTAC--GTT--GTCTCTGTTTGGGCATCAAATGCGTTTTAATT 99579 ||||||||| || || || || ||| |||| | ||| || |||||||| | Sbjct 129447 CGACCGTACCGGTACCGGCACCCGTTCCGTCTTCGGCTGG----CAGATGCGTTTCGACC 129392 Query 99580 TGGCTGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCAT 99638 |||| | || ||||| || || || ||| |||| |||||| || || ||||| Sbjct 129391 TGGCCAAGGGCTTTCCGGTGACGACCACCAAGAAGCTG-CACCTCAAGTCAATCATTCAC 129333 Query 99639 GAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTC 99698 ||| | | |||||| | |||| || ||||| | | |||||| | || |||| || Sbjct 129332 GAATTGTTGTGGTTCATTCAAGGCGACACCAACATCTCGTACCTTCAGGAGCACGGAGTA 129273 Query 99699 ACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAG 99758 |||||| ||| ||||| ||||| |||| ||| | || ||||| ||||| |||||| Sbjct 129272 CGCATCTGGGATGCGTGGGCCGACGAGCACGGCGACCTCGGCCCGGTCTACGGCAAGCAG 129213 Query 99759 TGGCG 99763 ||||| Sbjct 129212 TGGCG 129208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734192263616160