Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq3574 260 8e-65 seq112 167 1e-36 seq6557 141 6e-29 >seq3574 Length=6226 Score = 260 bits (288), Expect = 8e-65 Identities = 464/665 (70%), Gaps = 24/665 (4%) Strand=Plus/Plus Query 788 TACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACCGGC 847 |||||||||||| ||||| | ||| ||| | | ||| || ||||||||| Sbjct 2647 TACGAAGACCTGATGCGCCTGGCCTATGAGCAAGGCGTGGCCAAGACAGACCGCACCGGC 2706 Query 848 ACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTCCCG 907 |||||||||| ||| ||| ||| |||| |||| | ||| || | ||| ||||||||| Sbjct 2707 ACCGGCACGCGCAGCCTGTTTGGCCACCAGATGCGCTTCGATCTGAACGAAGGCTTCCCG 2766 Query 908 CTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC--GAACTTCTGTGGTTCC 965 |||||||||||||| || ||| | ||| | | | | ||||| |||||||||| Sbjct 2767 GTGGTCACCACGAAGAAGGTGCACCTGAAAAGCAT--CATCCTGGAACTGCTGTGGTTCC 2824 Query 966 TCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGACGAGT 1025 | | ||||| | |||| ||| | || |||||| ||||||| |||| | Sbjct 2825 TGCGCGGCGATTCCAACGCCCGCTGGCTGCAGGATCGCGGCGTGCGCATCTGGAACGAAT 2884 Query 1026 GGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGGC--A 1083 |||||| ||| || |||| || || || ||||||| ||||||||| ||||| | Sbjct 2885 GGGCCGGGCCCGATGGCGACCTGGGGCCGGTGTACGGCGTGCAGTGGCGCAGCTGGCCCA 2944 Query 1084 TGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGG---AGCTGCT 1140 | | ||||| || | | || |||||||| ||||| |||| ||| ||| Sbjct 2945 CGCCC--GACGGCGG--CCAC----ATCGACCAGAT---GGCCGAGGTGGTGAAGCAGCT 2993 Query 1141 TCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAG 1200 | |||| || ||||| || | | | || ||| |||||||| | || || Sbjct 2994 CAGAACCAACCCCGATTCGCGGCGCATCATCGTCAGCGCCTGGAACGTGGCCGAACTGCA 3053 Query 1201 CGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCT 1260 | | ||||| || || ||||| | | |||||| | || || | ||| || || || Sbjct 3054 CAAGATGGCCCTGGTGCCCTGCCATGCCTTCTTCCAGTTCTATGTGGCCGAAGGGCGCCT 3113 Query 1261 CTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCG 1319 ||||| || |||||||||||||||| ||||| ||||| || ||||| ||||| |||| Sbjct 3114 GA-GCTGCCAGCTCTACCAGCGCAGCGCCGACATTTTCCTGGGCGTGCCCTTCAACATCG 3172 Query 1320 CCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGC 1379 || |||||||| || |||||||| | ||||||||| || ||| |||||| || Sbjct 3173 CCAGCTACGCGCTGCTGACGCACATGCTGGCGCAGCAGTGCGATTTGCAGGTGGGCGATT 3232 Query 1380 TGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAG-GCGCTGATG 1438 | |||||||| || ||||||||||||||||||||| |||| |||| ||| |||| | || Sbjct 3233 TCATCTGGACAGGTGGCGACTGCCACATCTACAACGACCATTTCGAACAGTGCGC-GCTG 3291 Query 1439 CAGCT 1443 ||||| Sbjct 3292 CAGCT 3296 >seq112 Length=422422 Score = 167 bits (184), Expect = 1e-36 Identities = 402/599 (67%), Gaps = 12/599 (2%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || || ||||| |||||||| | | |||||| ||| |||| | |||||| || Sbjct 129446 GACCGTACCGGTACCGGCACCCGTTCCGTCTTCGGCTGGCAGATGCGTTTCGACCTGGCC 129387 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 ||||||| ||| || ||||| ||| | ||| |||| || | ||||| | Sbjct 129386 AAGGGCTTTCCGGTGACGACCACCAAGAAGCTGCACCTCAAGTCAATCATTCACGAATTG 129327 Query 956 CTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATC 1015 |||||||| | |||||||| ||| | | || | || |||| || |||| Sbjct 129326 TTGTGGTTCATTCAAGGCGACACCAACATCTCGTACCTTCAGGAGCACGGAGTACGCATC 129267 Query 1016 TGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGG 1075 ||||| | ||||||||||| ||| ||||||| || ||||||||| ||||||||| Sbjct 129266 TGGGATGCGTGGGCCGACGAGCACGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCGT 129207 Query 1076 CACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAG 1135 | |||| | |||||| | ||| || ||||||||| || | | | Sbjct 129206 CGCTGGGAAACACCGGACGGTCGG--GTC----ATCGACCAGATCGCGCAACTCATTCA- 129154 Query 1136 CTGCTTCGCGAGGA-CCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGA 1194 | || | || | ||| ||||| |||||| || | || || || |||||| ||| || Sbjct 129153 CGGCCTGAAGAACAACCCGGACTCCCGCCGGCACATCGTTTCGGCCTGGAACCCCGGCGA 129094 Query 1195 CCTC-AGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACG 1253 || ||| ||||||| || | || ||||| | |||||||| | || |||| ||||| Sbjct 129093 TGTCGAGC-ACATGGCCCTACCGCCCTGCCATTGCCTGTTCCAGTTCTATGTCGCCGACG 129035 Query 1254 GCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTC 1312 || |||| || |||| || |||||||||||||||| ||||| || || || || || ||| Sbjct 129034 GCAGGCTGTC-CTGCCAGCTCTACCAGCGCAGCGCCGACATCTTTCTGGGCGTACCCTTC 128976 Query 1313 AATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTG 1372 || || ||||| ||||| || | || ||| |||| ||| |||| | | | Sbjct 128975 AACATTGCCTCCTACGCCCTGTTTACGATGATGCTCGCTCAGATTTGCGGCTACCAGCCG 128916 Query 1373 GGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGC 1431 || ||| | | ||| ||||||| ||| |||| ||||||| |||| ||||| Sbjct 128915 GGCGAGTTCGTGCACACCTTCGGCGACGCGCACCTCTATGCCAACCACTTCGAGCAGGC 128857 >seq6557 Length=877522 Score = 141 bits (156), Expect = 6e-29 Identities = 208/290 (72%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 3426 TTCGGCTCCACGGTCAATGAGGCAGGGTTCCGCGAGCTCGACCCGCACGTGGGTGTGATC 3485 |||||| |||| ||| ||| || ||||||||||| |||||| ||| || ||||| Sbjct 682188 TTCGGCGGCACGTTCACAGAGAAGGGTTTCCGCGAGCTTAACCCGCGCGTCGGCCTGATC 682247 Query 3486 TACGGCGATTCGATCACCCTGAATCGGGCGGCGTCGATCACCGGTC--GGCTCGCTGAGA 3543 |||||||| ||||| || || || ||| |||| | ||| |||| |||| | Sbjct 682248 TACGGCGACTCGATTACGCTATTACGAGCGCAAGCGATT--CTGTCCCGGCTGGCTGCCA 682305 Query 3544 TGGGTTACGCGTCCACGAACGTCGTTTTCGGCGTCGGCTCGTACACGTACCAGTACAACA 3603 ||||| ||| || |||||||| | || |||| || || || ||||||||| | Sbjct 682306 AGGGTTTTGCGAGCAGCAACGTCGTGCTGGGTATCGGTTCCTATACCTACCAGTACCTTA 682365 Query 3604 CCCGGGACACGTTCGGCAGCGCCATGAAGGCCACGTGGGCCGAGGTGGACGGTGAGG-GC 3662 ||||||||| |||||| | || |||||||| |||| | || ||| |||| |||| || Sbjct 682366 CCCGGGACAGCTTCGGCTGGGCGATGAAGGCGACGTTCGGCGTGGTCAACGGCGAGGCGC 682425 Query 3663 GTGAACCTGCTCAAGGACCCGATCACCGACGACGGAACGAAGCGCTCGGC 3712 | || | | ||||||| ||| | || |||| || || ||||||||||| Sbjct 682426 GCGAGC-TCTTCAAGGATCCGGTAACGGACGCAGGCACCAAGCGCTCGGC 682474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296098588181436