Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq329 196 2e-45 seq775 125 2e-24 seq2001 116 1e-21 >seq329 Length=129497 Score = 196 bits (216), Expect = 2e-45 Identities = 186/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||| ||||| | ||||||||| ||||| ||||| || || ||||| |||||||||| Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 ||| | | | | || || ||||| ||||||| |||| ||||||||||||||| || Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 ||| | ||||| || || || || ||| ||||||||| | |||||||||| |||||| Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 |||||||||| ||||||||| ||| || |||| ||||||||| ||||| |||| Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCG 49671 Score = 140 bits (154), Expect = 1e-28 Identities = 332/490 (68%), Gaps = 34/490 (7%) Strand=Plus/Minus Query 39015 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGA 39074 ||||||||| | | || || ||| | ||| || | || ||| |||||| ||||| | Sbjct 51035 GCCGCCATGAAGGCCGCGCAGTGGTGGGCCTTAAGCCAGGCGGTGTGGTAGGTGATGACA 50976 Query 39075 CCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAG--GGTACGAGCACGT 39132 |||| || || | ||||| |||||||||| ||||| ||||||| ||| | || || Sbjct 50975 GCGTAGGCTGCGGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTC--ATCAGGT 50918 Query 39133 CCCACACCGCCTGGATGGCACCGTCCGA--GTAGCCTCGCTCGCGCGCTCCCTTCTGGAA 39190 | | | | || | | || || | | ||||||| || ||| ||| | | || Sbjct 50917 CGAATAACTGCTCG--GCCAGCGCCGGGTTGTAGCCTTTTTCCTTCGC-CCCGGCGGCAA 50861 Query 39191 -GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAA 39249 | || || | |||||||| | |||| |||||| |||||||| || ||||| || | Sbjct 50860 TGGTCTCGCGGTGCTTGGCCATTTCATCGGCCTTCTTTTTGCCCATCGCCCGGCGCAGCA 50801 Query 39250 GGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCA---CCTGCT 39306 |||||| ||||| |||| || ||| || ||| || |||||| |||| | Sbjct 50800 TGTCGGCACCGCCCAGCGTGTAGCCGCCGATGACCTG---CGATATCTGCATGACCTGTT 50744 Query 39307 CCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCT 39366 ||||||| | || | |||||||||||| || |||| |||| || | Sbjct 50743 CCTGGTACACGATGACGCCGTAGGTCGGCGACA-------GGCAGGCGG-----TCAGGT 50696 Query 39367 CGGGGTGG--ATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTG 39424 |||||||| || | | |||| ||||||||| |||||||| ||| | || |||| Sbjct 50695 CGGGGTGGAAATAGTC--GATCTTCTGCTGCCCCTTCTTGCGCAGGATGAAG-TCGTCGA 50639 Query 39425 CGAGCCC-ACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGA 39483 | | ||| ||| | ||| ||||| ||||| ||||| | |||||| |||||||||||| Sbjct 50638 CCATCCCGGAGCCGAGCGGCCCCGGTCGGTAGAGCGCCAGCACGGCGATGATGTCCTCGA 50579 Query 39484 AGTTGTCCGG 39493 || ||| || Sbjct 50578 AGCGGTCGGG 50569 >seq775 Length=20816 Score = 125 bits (138), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||| | ||| ||||| ||||| ||||||||||||||||| || ||||| | Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAAC 40284 || || | | || |||||| | |||||| || ||| ||||| |||||||| | Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCA-TAGGCCACCAGCGAGC 722 Query 40285 CGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40344 | ||| |||| || || || || || ||| |||||| || |||||||| |||| Sbjct 723 CCGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGA 782 Query 40345 AGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA 40380 | || ||||| ||||||||| |||||| |||| Sbjct 783 AATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCA 818 >seq2001 Length=3286380 Score = 116 bits (128), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATC 40142 ||||| || |||||| ||||| | ||| |||||||| || ||| || |||| Sbjct 2541117 CCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGATG 2541058 Query 40143 ACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40200 || ||||| || || || || |||||| ||||| | |||||| | |||||| || | Sbjct 2541057 ACCTCGCCGCGGCGATCCATGCA--GAAGTCCATGTCGATGTCGGGGAGGGACACACGTT 2541000 Query 40201 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGC 40260 | || ||||||||||||||||||| || | || || || ||||| || ||||||| Sbjct 2540999 CCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATGC 2540940 Query 40261 CGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGAC 40312 || |||||||||||| || || ||||| || ||||| || ||||| Sbjct 2540939 GCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160123616491808