Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq112 141 1e-28 seq3574 95.1 2e-14 seq4979 89.7 8e-13 >seq112 Length=422422 Score = 141 bits (156), Expect = 1e-28 Identities = 218/309 (71%), Gaps = 4/309 (1%) Strand=Plus/Minus Query 201787 CACCATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGC 201846 ||||||| | | || || ||| | || | | || | ||| || || ||| |||| | Sbjct 129507 CACCATGCAGCCCTACCTCGACCTGATGTGCCACGTGCTCGACAAGGGCCATGAAAAATC 129448 Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTA-- 201904 ||||||||||||||| ||||||| || || ||||| | |||||||| || || | Sbjct 129447 CGACCGTACCGGTACCGGCACCCGTTCCGTCTTCGGCTGGCAGATGCGTTTCGACCTGGC 129388 Query 201905 CAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAG 201964 |||| || |||||| || |||||||| ||| | ||||| |||||||| || || Sbjct 129387 CAAG--GGCTTTCCGGTGACGACCACCAAGAAGCTGCACCTCAAGTCAATCATTCACGAA 129330 Query 201965 CTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACC 202024 || |||||||| | || |||||||||||| ||| | | || || || | Sbjct 129329 TTGTTGTGGTTCATTCAAGGCGACACCAACATCTCGTACCTTCAGGAGCACGGAGTACGC 129270 Query 202025 ATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 |||||||| | ||||| || | |||| ||| | |||||||| ||||| ||||| ||| Sbjct 129269 ATCTGGGATGCGTGGGCCGACGAGCACGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGG 129210 Query 202085 CGTAGCTGG 202093 ||| ||||| Sbjct 129209 CGTCGCTGG 129201 >seq3574 Length=6226 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 201848 GACCGTACCGGTACGGGCACCCTCT--CTGTTTTCGGACGCCAGATGCGCTTTAACTTAC 201905 ||||| ||||| || ||||| | | |||||| || | |||||||||||| | | Sbjct 2695 GACCGCACCGGCACCGGCACGCGCAGCCTGTTT--GGCCACCAGATGCGCTTCGATCTGA 2752 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 | ||||| || ||| |||||||||| || ||||| ||||| ||||||| || | Sbjct 2753 ACGAAGGCTTCCCGGTGGTCACCACGAAGAAGGTGCACCTGAAAAGCATCATCCTGGAAC 2812 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 ||||||||||||| || || ||||| || | || | || | ||| || Sbjct 2813 TGCTGTGGTTCCTGCGCGGCGATTCCAACGCCCGCTGGCTGCAGGATCGCGGCGTGCGCA 2872 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 ||||| |||||||||| | | || ||| | || ||||||||||| ||| |||| Sbjct 2873 TCTGGAACGAATGGGCCGGGCCCGATGGCGACCTGGGGCCGGTGTACGGCGTGCAGTGGC 2932 Query 202086 GTAGCTGG 202093 | |||||| Sbjct 2933 GCAGCTGG 2940 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 202204 CATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTAT 202263 ||| ||||| || ||| | ||||| | ||||| | | ||||||| || || || Sbjct 2961 CATCGACCAGATGGCCGAGGTGGTGAAGCAGCTCAGAACCAACCCCGATTCGCGGCGCAT 3020 Query 202264 TATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACGAGATGGCCTTGGCCCCGTGTCATGC 202323 || |||||||||||||||||||| || || || |||||||| ||| || || ||||| Sbjct 3021 CATCGTCAGCGCCTGGAACGTGGCCGAACTGCACAAGATGGCCCTGGTGCCCTGCCATGC 3080 Query 202324 GTTCTTCCAGTTCTA 202338 |||||||||||||| Sbjct 3081 CTTCTTCCAGTTCTA 3095 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 202496 TGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGCGTCT 202555 || |||||||| ||||| || || ||||| ||||| ||||| || || |||||||| Sbjct 3118 TGCCAGCTCTACCAGCGCAGCGCCGACATTTTCCTGGGCGTGCCCTTCAACATCGCCAGC 3177 Query 202556 TACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGACTTCGT 202614 ||||| ||||| |||||| | || || ||| |||| || ||| ||||| ||| | Sbjct 3178 TACGCGCTGCTGACGCACATGCTGGCGCAGCAGTGCGATT-TGCAGGTGGGCGATTTCAT 3236 Query 202615 CTGGACAGGTGGTGA 202629 |||||||||||| || Sbjct 3237 CTGGACAGGTGGCGA 3251 >seq4979 Length=1283317 Score = 89.7 bits (98), Expect = 8e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 3497 GGTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTT 3556 ||||| ||||||||||||| || |||||||||||||||| | | || | ||||| ||||| Sbjct 500208 GGTACCCAAGCGGTCAACGGGAACAGACTGTAAATCTGTCGGC-TCTGCCTTCGAAGGTT 500266 Query 3557 CAAATCCTTCCCTCGCCACCA 3577 | |||||||||| | |||||| Sbjct 500267 CGAATCCTTCCCCCTCCACCA 500287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787914195038560