Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq112 178 2e-39 seq3574 118 2e-21 seq6036 86.0 1e-11 seq4979 84.2 3e-11 >seq112 Length=422422 Score = 178 bits (196), Expect = 2e-39 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 196043 CGTGTTGAACGAAGGTCACGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTT 196102 |||| | || | || || || ||| | ||||||||||| || |||||| || | || Sbjct 129474 CGTGCTCGACAAGGGCCATGAAAAATCCGACCGTACCGGTACCGGCACCCGTTCCGTCTT 129415 Query 196103 CGGGTATCAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTT 196162 ||| | ||||||||||| |||||| ||| || || ||| || |||||||| ||| | Sbjct 129414 CGGCTGGCAGATGCGTTTCGACCTGGCCAAGGGCTTTCCGGTGACGACCACCAAGAAGCT 129355 Query 196163 GCACCTGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCA 196222 |||||| || ||||| |||||| ||||||||||| | | ||||||||||||||| Sbjct 129354 GCACCTCAAGTCAATCATTCACGAATTGTTGTGGTTCATTCAAGGCGACACCAACATCTC 129295 Query 196223 GTATCTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCT 196282 ||| || | || || || | |||||||||| |||||| || || | ||||| || Sbjct 129294 GTACCTTCAGGAGCACGGAGTACGCATCTGGGATGCGTGGGCCGACGAGCACGGCGACCT 129235 Query 196283 TGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 ||||| |||||||| |||||||||||| Sbjct 129234 CGGCCCGGTCTACGGCAAGCAGTGGCGT 129207 >seq3574 Length=6226 Score = 118 bits (130), Expect = 2e-21 Identities = 173/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCAC---CATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTG 196127 ||||| |||||||| ||||| || | || ||| || | |||||||| || || ||| Sbjct 2695 GACCGCACCGGCACCGGCACGCGCAGC-CTGTTT--GGCCACCAGATGCGCTTCGATCTG 2751 Query 196128 CGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAA 196187 | |||| |||||| |||||||||| || ||| |||||||| | ||||||| ||| Sbjct 2752 AACGAAGGCTTCCCGGTGGTCACCACGAAGAAGGTGCACCTGAAAAGCATCATCCTGGAA 2811 Query 196188 CTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGT 196247 ||| ||||||||||| |||||| ||||| || | ||| | || | ||| | Sbjct 2812 CTGCTGTGGTTCCTGCGCGGCGATTCCAACGCCCGCTGGCTGCAGGATCGCGGCGTGCGC 2871 Query 196248 ATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 |||||| | || ||||| | |||||||| || || || || ||||| ||||||| Sbjct 2872 ATCTGGAACGAATGGGCCGGGCCCGATGGCGACCTGGGGCCGGTGTACGGCGTGCAGTGG 2931 Query 196308 CG 196309 || Sbjct 2932 CG 2933 Score = 109 bits (120), Expect = 8e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| ||||||||||| || ||| | ||||| || || || ||||||||||| Sbjct 3117 CTGCCAGCTCTACCAGCGCAGCGCCGACATTTTCCTGGGCGTGCCCTTCAACATCGCCAG 3176 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATTTCGT 196873 ||||| ||| || |||||| |||| |||||| | || || || ||| |||||| | Sbjct 3177 CTACGCGCTGCTGACGCACATGCTGGCGCAGCAGTGCGATTTGCAGGTGGGCGATTTCAT 3236 Query 196874 CTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTGCAGCT 196933 |||||| || ||||| ||| | ||| ||||| | |||||| | || ||||||| Sbjct 3237 CTGGACAGGTGGCGACTGCCACATCTACAACGACCATTTCGAACAGTGCGCGCTGCAGCT 3296 >seq6036 Length=8020 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAG 4651 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 5459 TTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCCCTGGTTCAAATCCAG 5401 >seq4979 Length=1283317 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 4117 GGCGGGTTACTCAAGCGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGT 4176 || ||| ||| ||||||||||||| || |||||||||||||||| | | || | ||||| Sbjct 500203 GGAGGGGTACCCAAGCGGTCAACGGGAACAGACTGTAAATCTGTCGGC-TCTGCCTTCGA 500261 Query 4177 AGGTTCAAATCCTTCACACGCCACCA 4202 |||||| |||||||| | | |||||| Sbjct 500262 AGGTTCGAATCCTTCCCCCTCCACCA 500287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770220193801760