Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq6557 109 4e-19 seq2001 91.5 1e-13 seq450 89.7 3e-13 >seq6557 Length=877522 Score = 109 bits (120), Expect = 4e-19 Identities = 229/337 (68%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 96743 ACCGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATT 96802 || ||||| | ||||| || || ||||| |||||||| || ||||| |||||||| | Sbjct 46331 ACAGTGCCGGTCGGGCCGTTACGCTGCTTGCCGATAATCACTTCGGCGATGCCCTTG-TC 46273 Query 96803 TCGC-TATCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTG 96861 || |||| || | || ||| ||||| |||| | || || | |||||| ||||| Sbjct 46272 GGGCGTATCGGGCTTGTAGTATTCCTCGCGGTACATCATCAAAATAACGTCTGCATCCTG 46213 Query 96862 CTCAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTC 96921 |||||| || || ||||| || | || || | | ||| || ||||| |||| || Sbjct 46212 CTCAATGGCGCCGGATTCGCGCAGGTCGGACATCATCGGACGCTTGTCGTTGCGCTCCTC 46153 Query 96922 AAGCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGC 96981 | | || || || |||| || || | |||||| ||||| ||||| |||| || Sbjct 46152 GACCTTGCGCGACAGCTGCGACAGGGCGACGATCGGTACCTGTAACTCCTTGGCCAGCGA 46093 Query 96982 CTTCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGG--G 97039 ||| | || || || || |||| | |||| | ||||| ||| | || ||| | Sbjct 46092 CTTGATCGAACGCGAGATATCGGAGACTTCCGTGGCCCGGTTCTCTCCCTGC--CGGTTG 46035 Query 97040 ACGCGCATAAGTTGCAGGTAGTCGATCATAATCATGC 97076 ||| ||| | || | ||||||||||| |||| || Sbjct 46034 CCGCTCATCAACTGGATGTAGTCGATCACGATCAGGC 45998 >seq2001 Length=3286380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 96749 CCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTA 96808 ||||| || || ||||| ||||| | ||| || | ||| |||||||| || ||||| Sbjct 1539303 CCAATCGGCCCGTTTCGATGCTTGCTGATGATAATCTCAGCAATGCCTTT----TCGCTC 1539248 Query 96809 ----TCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTC 96864 | | ||| ||| || || |||||||| | |||||||| || ||| ||||||||||| Sbjct 1539247 AGAGTTCTGGTCATAGACATCTTCGCGATAGATAAACATGACCACGTCGGCGTCCTGCTC 1539188 Query 96865 AATTGCTCCTGATTCACGTAAATC 96888 || || || |||||||| || || Sbjct 1539187 GATCGCGCCGGATTCACGCAAGTC 1539164 >seq450 Length=27002 Score = 89.7 bits (98), Expect = 3e-13 Identities = 216/323 (67%), Gaps = 7/323 (2%) Strand=Plus/Plus Query 96745 CGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCAT-TT 96803 |||||| | || || || || ||||| ||||| || | ||| || | |||| | || Sbjct 21195 CGTGCCCGTGGGCCCGTTGCGCTGCTTGCCGATGATGATCTCAGCCACGCCCGGCTCCTT 21254 Query 96804 CGCTATCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCT 96863 || ||| || || |||||||| || | |||||||||| ||| || ||||| | Sbjct 21255 CGAG-TCCTTGTTGTAGTACTCGTCGCGGTAGATGAACATGATCACGTCGGCATCCTGTT 21313 Query 96864 CAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAA 96923 | || || || ||||| || | || | | ||| || ||||| | ||| || | Sbjct 21314 CGATGGCGCCCGATTCCCGCAGGTCACTCATCATCGGGCGCTTGTCGGGCCGCGTCTCCA 21373 Query 96924 GCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCT 96983 ||| || || | ||| ||||| || | |||||| ||| |||||||| |||| || | Sbjct 21374 CCGAGCGGTTCAATTGCGACAAGGCAATCACCGGACATTGCAATTCCTTGGCCAGCGATT 21433 Query 96984 TCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATC----TTGCAGCTCCGGG 97039 |||| ||| || || ||| | || | || ||||| || || |||| | | Sbjct 21434 TCAGCCCGCGCGAGATTTCGCCGATCGTCGTCGCCCGGTTTTCCTCGTTCGTGCTC-GAG 21492 Query 97040 ACGCGCATAAGTTGCAGGTAGTC 97062 ||| ||| |||||||||||||| Sbjct 21493 CCGCTCATCAGTTGCAGGTAGTC 21515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330862759311976