Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq6036 670 0.0 seq2406 96.9 4e-15 seq6557 95.1 2e-14 >seq6036 Length=8020 Score = 670 bits (742), Expect = 0.0 Identities = 739/982 (75%), Gaps = 4/982 (0%) Strand=Plus/Plus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 |||||| ||||| | |||||||| || ||| | ||||| | || | ||||||||| Sbjct 33 TGGGAACGTTTCTGTGGTTGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTT 92 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTC 183306 || | ||| | || || | || ||||||| || | |||| | || ||| || Sbjct 93 GGTTGTTTAATGTTCCCTACATTATTAACAGCAACTTCTTGTTACATCATCGCATTCATC 152 Query 183307 GCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTAT 183366 || |||||||| || || ||||| || ||||| || || || || || || | | || Sbjct 153 GCAGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCAGTAGCAGGTTCATTATTATAC 212 Query 183367 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTC 183426 || |||||||||||||||||||||||| | ||| ||| ||||| || || | |||||| Sbjct 213 GGTAACAACATCATCTCTGGTGCAGTTATCCCTAGTTCTAACGCTATCGGTATGCACTTC 272 Query 183427 TATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAA 183486 || || || ||||||||||| ||| ||||||||||| | || |||||||||||||||||| Sbjct 273 TACCCAATTTGGGAAGCAGCTTCAATCGATGAGTGGTTATACAACGGTGGTCCTTACCAA 332 Query 183487 CTCGTAGTCTTCCACTTCCTCATTGGCGT--CTTCTGCTACATGGGTCGTGAGTGGGAAT 183544 | | || | |||||| | | || || | ||| |||||||||||||| ||||||| Sbjct 333 TTAATCGTTTGTCACTTCTTATTAGGAGTAGCATCT--TACATGGGTCGTGAATGGGAAT 390 Query 183545 TGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTG 183604 | ||||||||| | ||||||||||||||||||| || |||| || || || || | Sbjct 391 TATCTTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCTTTCTCTGCTCCAGTAGCAG 450 Query 183605 CTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGC 183664 | || | || || ||| | || || || | ||||||||||| || ||||||||||| Sbjct 451 CAGCTTCTGCAGTATTCTTAGTATACCCAATTGGTCAAGGTTCATTCTCTGATGGTATGC 510 Query 183665 CCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCC 183724 | | ||||| ||| || || |||| ||| | || |||||||| ||||||||||| Sbjct 511 CTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCTGAGCACAACATTT 570 Query 183725 TGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTG 183784 | |||||||| ||||||||| ||||| |||||||| || ||||||||| | ||| | Sbjct 571 TAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTTGGTGGTTCTTTATTCTCAG 630 Query 183785 CAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCAC 183844 | ||||||||||| | || ||||| || | |||||||||| ||||| || ||| Sbjct 631 CTATGCACGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAGCGAATCAA 690 Query 183845 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATG 183904 ||||| |||||||| ||||||||||||||||| || |||||||| || || ||||| | Sbjct 691 CTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACG 750 Query 183905 GATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACT 183964 | ||||| |||||| | |||||||| || ||||| || ||||| |||||| || | |||| Sbjct 751 GTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTGCTTTACACT 810 Query 183965 TCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTA 184024 ||||| | ||| |||||||| | || |||||||| |||||| | ||| |||| |||| Sbjct 811 TCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTGCTATGGGTATTAGTACTA 870 Query 184025 TGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 184084 |||| || ||| | || ||||| ||||||||||| || | | ||| |||||||||| Sbjct 871 TGGCGTTCAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTG 930 Query 184085 TCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACG 184144 | | ||||| ||||| || | | |||||||||| | | || |||||||| ||||||| Sbjct 931 TAATCAACACTTGGGCTGATATCGTTAACCGTGCTGATTTAGGTATGGAAGTAATGCACG 990 Query 184145 AGCGTAATGCTCACAACTTCCC 184166 | ||||| || ||||||||||| Sbjct 991 AACGTAACGCGCACAACTTCCC 1012 >seq2406 Length=10495 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 4619 ATTCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 4560 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||| | ||||| Sbjct 4559 GCCCAGGTCGGGGAGC 4544 >seq6557 Length=877522 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||||| |||||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 711266 TTCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAG 711207 Query 19808 CCCAGGTGGAGGAGC 19822 ||||||| | ||||| Sbjct 711206 CCCAGGTCGGGGAGC 711192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622000137148320