Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3957 141 2e-28 seq2001 140 7e-28 seq6557 125 1e-23 seq2502 96.9 7e-15 seq8993 86.0 1e-11 seq5445 86.0 1e-11 seq2968 86.0 1e-11 seq2402 86.0 1e-11 seq2225 86.0 1e-11 seq2446 84.2 5e-11 seq1112 84.2 5e-11 >seq3957 Length=668572 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| || ||||||||||| | | ||||| |||||||| || ||||| || || |||| Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||| || || || ||| ||||| ||||| |||||||||||||| || || || ||| Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| ||||| |||| || || || | || || ||||| || || || || || |||| Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 283090 ATATCTGCATTTT 283102 | ||||||||||| Sbjct 478696 AGATCTGCATTTT 478684 >seq2001 Length=3286380 Score = 140 bits (154), Expect = 7e-28 Identities = 253/367 (69%), Gaps = 10/367 (3%) Strand=Plus/Plus Query 301318 AAATTTATGTTCATCACCGGCGGCGTT-TCAAGTTCATTGGGGAAAGGCCTCGCTGCTGC 301376 |||||||| ||| | || || || || || || | ||||||| ||||| || | || Sbjct 2009734 AAATTTATTTTCGTGACAGGTGGAGTGGTCTCGT-CGCTGGGGAAGGGCCTGGCGTCGGC 2009792 Query 301377 GAGTATCGCCAGTTTACTAGAGAGGCGATGCTTAAAGATAGCGATGCTTAAAATGGACCC 301436 | |||| | | | || ||||| || | | ||||| || | | || | || || Sbjct 2009793 GTCGATCGGAAATCTCCTGGAGAGCCGCGGGCTCAAGATCACGTTCTTGAAGCTCGATCC 2009852 Query 301437 CTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGTGAC 301496 ||| ||||| ||||||||||| ||||||| || ||| ||||| ||||| |||||||| Sbjct 2009853 CTACATCAATGTCGATCCGGGCACGATGAATCCCTATCAGCATGGTGAAGTCTTCGTGAC 2009912 Query 301497 GGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACTTCATTAAC 301556 || || || || || || ||||| ||| ||||||| ||||| || ||||| || | | Sbjct 2009913 TGAAGACGGCGCCGAGACGGATCTCGATTTGGGGCATTACGAGCGATTCACCTCGCTCTC 2009972 Query 301557 CCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAA----GTTATCGAAA 301612 ||| | | ||||| |||| || || || | ||||| || |||||| || Sbjct 2009973 CCTGACGAAGGAAAGCAATTACACCACGGG----GCGGATTTACAATTCCGTTATCACAA 2010028 Query 301613 ATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACCGATG 301672 | |||||| || ||||||||| || || || || || || ||||||||||| | Sbjct 2010029 AAGAACGCCGGGGCGACTATCTCGGCGGCACCGTCCAGGTCGTGCCGCACATCACCGACG 2010088 Query 301673 AAATCAA 301679 | ||||| Sbjct 2010089 AGATCAA 2010095 >seq6557 Length=877522 Score = 125 bits (138), Expect = 1e-23 Identities = 325/485 (67%), Gaps = 28/485 (6%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 ||||| || ||||||||||| || || ||||||||||| || || || || || || Sbjct 520361 GACCCTTACATCAACGTCGACCCCGGCACGATGAGCCCTTTCCAGCACGGCGAGGTCTTT 520302 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCACTTCA 301551 || || || ||||| || || ||||| || ||||| || |||||||| || |||| Sbjct 520301 GTCACCGAGGATGGCGCCGAGACCGACCTTGATCTCGGCCACTACGAGCG-----CTTCT 520247 Query 301552 TTAACCCTTAAGCGTGAAAG-----TAATTTTACGACTGGCCAAGTTTATTTAAAAGTTA 301606 | | | || | | ||| ||||| ||||| ||||| || ||| ||| Sbjct 520246 CCAGCGCCAAAATGGGCAAGCGCAACAATTTCACGACCGGCCAGGTCTATGACTCGGTTC 520187 Query 301607 TCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCA 301666 || | || || ||| || |||||||| ||||||||||| || |||| ||||||| Sbjct 520186 TCAAGAAAGAGCGCCGTGGCGAATATCTCGGCAAGACGGTGCAGGTCATTCCGCACATCA 520127 Query 301667 CCGATGAAATCAA-AAGAAGAATTCACATTGCG--GCTGAAAAATCAGATATACTTATTG 301723 |||| |||||||| | |||| ||| | || || || | ||| | ||| | Sbjct 520126 CCGACGAAATCAAGGACAAGA--TCA-AGGCCGGTGCGGAGGGCGCCGATGTGGCTATCG 520070 Query 301724 GAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTC 301783 || | || || ||||| || || ||||| ||||| || || | ||||| ||||| | Sbjct 520069 TCGAGGTCGGCGGCACGGTGGGCGACATCGAGTCGCTGCCGTTCCTCGAAGCAATTCGCC 520010 Query 301784 AACTCTCTCATGACGAAGGAACGGC--CAATGTTCTG-TTCATTCATCT---CGTGCTCT 301837 | | ||| ||||| | || ||||| |||| | || || || | ||| Sbjct 520009 AGATGGGCATTGAGGAAGG--CCGCAACAATG-TCTGCTATATGCACCTGACCTTGC--- 519956 Query 301838 TACCCTATATAGCGACTGCTGGTGAGTTGAAATCAAAGCCAGCACAGCATTCGGTTAAAG 301897 | || ||||| ||||||| ||||| |||| | ||||| | ||||||||||| || | Sbjct 519955 TGCCTTATATCCCGACTGCCGGTGAACTGAAGACCAAGCCGACCCAGCATTCGGTCAAGG 519896 Query 301898 AATTG 301902 || || Sbjct 519895 AACTG 519891 >seq2502 Length=269351 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||| ||||| | || || ||| ||||||||| || ||||| | || |||||||||| Sbjct 88687 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTGCCTCCCTGCAGACGCGTACCAAACTGA 88746 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || | |||||| || ||| ||||||||| |||||||| | ||| |||| || | | Sbjct 88747 CCGTTGGGCAGCAGGAGGTTGATGTTGTTGGAGCCGACGTAGTTCTGCGCCAGGTTGATG 88806 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959 || || | || || | || |||||||| || || ||| ||||| | | ||| Sbjct 88807 ATGGTGGACATGAGCGAGGCTTCACCGTGGTGGTACGCAGAGTGCTCGGCCACGGAGCCA 88866 Query 273960 CTGAACTGAGCAACCTTCACAT--CGCTCGTCAAGTTTCGCTTGAA 274003 | ||| || ||||| | | |||| ||| ||| |||||||| Sbjct 88867 GCCAGCTGCGCGACCTTGATCTCACGCTTGTC--GTTACGCTTGAA 88910 >seq8993 Length=1510838 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 32938 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 32882 >seq5445 Length=1318393 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 259691 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 259747 >seq2968 Length=962679 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 744334 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 744390 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 744655 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 744599 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 770571 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 770515 >seq2402 Length=382183 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 69191 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 69135 >seq2225 Length=289728 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 79960 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 80016 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 80955 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 81011 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 82348 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 82404 >seq2446 Length=1160753 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || |||||| || ||||| || || | Sbjct 439689 ACCACCACGGAGCCGGAGGACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGA 439630 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || ||||| |||| |||||||||||| || Sbjct 439629 GAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGCCGTTGTTGGTCAGGGGG 439570 Query 282992 AATACC 282997 ||| || Sbjct 439569 AATGCC 439564 >seq1112 Length=3255245 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || || || |||||||| | ||| |||||||||||||| || || || || || || Sbjct 2620720 TTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAA 2620779 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGC 283018 |||||| || || ||||| || || || |||||||| ||||| || || Sbjct 2620780 GATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTTAGC 2620830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046618015077544