Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1112 111 1e-19 seq2446 87.8 2e-12 seq3957 86.0 6e-12 >seq1112 Length=3255245 Score = 111 bits (122), Expect = 1e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||||||||| |||||||||||| | || || ||||||||||| ||||| ||| Sbjct 2620093 TTCTGAATGTTATAGTCTGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCTGCGAAGATC 2620152 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 | |||||||||||| | ||| | | ||||||||| |||||| Sbjct 2620153 AAGCGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2620196 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||||||||| || |||||||| |||||||| | || || ||||||||||| ||||| Sbjct 2620721 TCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAG 2620780 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 |||| |||||| ||||| | ||| | | ||||||||| |||||| Sbjct 2620781 ATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2620827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| ||||||||||| || ||||| ||||| ||||| | || || Sbjct 2622960 ACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAGAGTGTGCGGCCATCCTCA 2623019 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| |||| |||||| ||||| | ||| | | ||||||||| | Sbjct 2623020 AGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 2623079 Query 41774 ATTTT 41778 ||||| Sbjct 2623080 ATTTT 2623084 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| ||||||||||| | || || ||||||||||| ||||| |||| |||||||||| Sbjct 2622638 TAGTCTGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGG 2622697 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || | ||| | | ||||||||| |||||| Sbjct 2622698 TCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2622729 >seq2446 Length=1160753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || |||||||||||||| || ||||| ||||| | || |||||||||||||| || || Sbjct 439652 TCTTTCTGAATGTTATAATCTGAGAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAA 439593 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 ||||| || |||||||| | ||||| || Sbjct 439592 ATCAGCCGTTGTTGGTCAGGGGGAATGC 439565 >seq3957 Length=668572 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| ||||| || | ||||| | || || ||||| ||||| ||||| ||| Sbjct 478874 TTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATC 478815 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CG 41792 || ||||| || || | |||| || ||| ||||| ||| || ||||| | | || Sbjct 478814 AGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTATCG 478755 Query 41793 ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 | ||||| | ||| ||||| | ||||| || || || || | || ||||||| Sbjct 478754 --ATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 41853 AAATCTGCATGTT 41865 | |||||||| || Sbjct 478696 AGATCTGCATTTT 478684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462251782763200