Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12]
9,036 sequences; 475,911,277 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1112 111 1e-19
seq2446 87.8 2e-12
seq3957 86.0 6e-12
>seq1112
Length=3255245
Score = 111 bits (122), Expect = 1e-19
Identities = 87/104 (84%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||||||||||||||| |||||||||||| | || || ||||||||||| ||||| |||
Sbjct 2620093 TTCTGAATGTTATAGTCTGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCTGCGAAGATC 2620152
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
| |||||||||||| | ||| | | ||||||||| ||||||
Sbjct 2620153 AAGCGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2620196
Score = 98.7 bits (108), Expect = 9e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
||||||||||| || |||||||| |||||||| | || || ||||||||||| |||||
Sbjct 2620721 TCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAG 2620780
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|||| |||||| ||||| | ||| | | ||||||||| ||||||
Sbjct 2620781 ATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2620827
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| || || ||| ||||||||||| || ||||| ||||| ||||| | || ||
Sbjct 2622960 ACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAGAGTGTGCGGCCATCCTCA 2623019
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| ||||| |||| |||||| ||||| | ||| | | ||||||||| |
Sbjct 2623020 AGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 2623079
Query 41774 ATTTT 41778
|||||
Sbjct 2623080 ATTTT 2623084
Score = 86.0 bits (94), Expect = 6e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746
||||| ||||||||||| | || || ||||||||||| ||||| |||| ||||||||||
Sbjct 2622638 TAGTCTGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGG 2622697
Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| | ||| | | ||||||||| ||||||
Sbjct 2622698 TCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2622729
>seq2446
Length=1160753
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|| |||||||||||||| || ||||| ||||| | || |||||||||||||| || ||
Sbjct 439652 TCTTTCTGAATGTTATAATCTGAGAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAA 439593
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGC 41759
||||| || |||||||| | ||||| ||
Sbjct 439592 ATCAGCCGTTGTTGGTCAGGGGGAATGC 439565
>seq3957
Length=668572
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||||||||| ||||| || | ||||| | || || ||||| ||||| ||||| |||
Sbjct 478874 TTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATC 478815
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CG 41792
|| ||||| || || | |||| || ||| ||||| ||| || ||||| | | ||
Sbjct 478814 AGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTATCG 478755
Query 41793 ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
| ||||| | ||| ||||| | ||||| || || || || | || |||||||
Sbjct 478754 --ATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697
Query 41853 AAATCTGCATGTT 41865
| |||||||| ||
Sbjct 478696 AGATCTGCATTTT 478684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462251782763200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |