Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq27183 87.8 1e-12 >seq27183 Length=12736 Score = 87.8 bits (96), Expect = 1e-12 Identities = 359/562 (64%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 18787 CGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG 18846 |||| || | || || |||| ||||| |||||| | |||||||| || ||||||| | Sbjct 6698 CGGGCGATTTGGGGCCGGTTTATGGCTTTCAGTGGCGCCATTTTGGTGCCAAATATAA-G 6640 Query 18847 ACTGTCAATCAAACTATTTACAGC----AAGGAATCGATCAGCTGCAAACTGTTATAGAT 18902 || | || | | | | ||||| |||| ||||||| ||||| |||||| | Sbjct 6639 ACATGCCATGA--CGACT-ACAGCGGCGAAGGCGTCGATCAATTGCAACAGGTTATAAAC 6583 Query 18903 ACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGAT 18962 || || ||||| ||| | ||||| || ||||| || |||||||||| ||| Sbjct 6582 ACCATACGCACAAATCCAACAGATCGACGCATTATTATGTCCGCTTGGAATCCTGTTGAT 6523 Query 18963 ATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGT 19022 || || ||||| | || ||||||||| ||| || || | || | || ||| Sbjct 6522 ATACCGCAAATGGCGTTGCCGCCATGTCACTGTTTAGCACAATTCTTTGTGTCTAATGGT 6463 Query 19023 GAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAAC 19082 || |||| || || | || ||| | | |||||||| | || || || ||||| Sbjct 6462 GAGCTATCGTGTCAGTTGTATCAGCGCAGCGCCGATATGGGTTTGGGCGTGCCCTTCAAT 6403 Query 19083 ATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGA 19142 ||||| ||||| || | || || || ||||||| | ||||| | || |||| Sbjct 6402 ATTGCCTCTTATGCGCTATTAACATATATGATAGCGCACATCACAGGCTTGAAGCCCGGC 6343 Query 19143 GATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAA 19202 || || | || || | || ||| | || | ||| ||||| | || | | ||| Sbjct 6342 GACTTTGTGCACACCCTCGGCGATACGCACGTCTACAAAAATCACGTTGAACCGCTCAAA 6283 Query 19203 GTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACA 19262 | ||| | | || |||| |||||| || || | |||| || | ||| Sbjct 6282 GAGCAATTGGTCCGCAAACCAAGACCTTTCCCAAAGCTAATCATTAAACGGCAGGTAGAG 6223 Query 19263 GATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccc 19322 |||| | || || |||| || ||||| || | | || || || || | ||| Sbjct 6222 CATATTGAGGATTTCAAATTCGAGGATTTCGAGATAGTCGGCTACAACCCCTATCCCAAG 6163 Query 19323 cTAAAAATGGAAATGGCTCTTT 19344 || |||||||||||||| ||| Sbjct 6162 ATACAAATGGAAATGGCTGTTT 6141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399204880618530