Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq37138 583 1e-161 >seq37138 Length=11844 Score = 583 bits (646), Expect = 1e-161 Identities = 1235/1836 (67%), Gaps = 20/1836 (1%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 52887 || ||||| || || | ||| |||||||| ||||| || || ||| | ||| |||| || Sbjct 3593 GCTGGTTTTGTGCGCAAATAATACATTCCAGTTTTAAGGCC-AGATTTCCAAGCGTAGAA 3651 Query 52888 ATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 52947 ||| || ||||| || ||| | || ||||| | || || || | ||| ||||| Sbjct 3652 ATGAATTGATGTTAACTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAAAGACTGACT 3711 Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 53007 |||||| || || ||||| || || || |||||||| || ||| || || |||||| Sbjct 3712 TTGATCAATAAAAGCTCCTCTATCAGCTGCCATTTTAATTGTCGATTTAACTGAAATTTC 3771 Query 53008 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTAT--TCTGAATAGA 53064 ||||| || || || || || | | ||| | | |||| ||| | || ||||| Sbjct 3772 CCAAACTGTCTTGTATAAGTCACGAATGGACTTAGGAATAGTTTCTATATTTTGTATAGA 3831 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| | ||||| ||| || || | |||| |||||||| ||||||| Sbjct 3832 ACCACGGCTTGATATAATTTGATTTTTCATGTTGTCATCCCATAATTCAAGTTCGGTTAG 3891 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184 | |||| || || || ||||||| ||||| ||||| ||||| || || | || ||||| Sbjct 3892 ATCTCTGAGAAGGTGATGATTAACAACTTGGAATTCACCAGATAAAACACGCCTGGTGTA 3951 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 |||||| ||||| ||||| | || |||||||| || | ||||||||| |||||||| Sbjct 3952 TATATTAGAAGTATAAGGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTGTTGATGC 4011 Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 53304 || ||||| || || || | |||| ||||| | || || || ||| | || || Sbjct 4012 TGTAGGCATGGGAGCAACAAGTAAAGAATTTCGTATGCCATACTTTTGAATTCTCTCCTT 4071 Query 53305 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 53364 || || | ||||| ||| | | | || ||| ||||| || Sbjct 4072 TAAAGCATTCCAATCCCACAAGTTTGTTGGCGTAACATTCCACATGTCGTATTGTAATAT 4131 Query 53365 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 53423 || || || | | || ||| |||||| || || || || | || |||| || Sbjct 4132 GCCTTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGACCGAACACTTCCGCTAATT 4190 Query 53424 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 53483 |||| || ||||||||||| || || || || ||||| || || | ||||||| | Sbjct 4191 CACAGCTTGCCTCTAATGCTCCATAGTAGATTGTTTCAAATATTTGTATATTTAGCAAAT 4250 Query 53484 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 53543 ||||| | ||| ||| |||||||| | || |||| || ||||| || || |||| Sbjct 4251 ATGCTTGCTCGCTTTCATATGGATAACGCATCAGTATAAGTGCATCTGCAAAACCCTGAA 4310 Query 53544 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 53603 | ||||| || || |||| ||| ||| ||||||| | | ||||| |||| |||||||| Sbjct 4311 CTCCAATTCCTATGGGTCGATGCCTCATATTAGATTTCTTGGCTTCAGGAAGAGGATAAT 4370 Query 53604 AATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTT 53663 |||| |||||||| |||||||| | ||| | || ||| || || || || | Sbjct 4371 AATTTATATCTATGATTTTATTCAAATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCT 4430 Query 53664 TGAGAAAATCAAATTGTCCATCTATTA-CA------AACATGTTCAATGCAATAGATGCC 53716 | |||||||| | | ||||| || |||||||| | ||||||||||| Sbjct 4431 TTTGAAAATCATAAG----ACTTATTAGCAGAAATGAACATGTTAAGAGCAATAGATGCT 4486 Query 53717 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTA 53776 ||||| |||||||||| ||||| | | | ||||| | || ||||| || | ||| Sbjct 4487 AGATTGCAAACGGCTATCTCATCTGGCGCTGAATATTCGACAATTTCAGTACACAAATTG 4546 Query 53777 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 53836 || || |||||||| || | ||||| ||||||||| ||| ||||||| | ||||||||| Sbjct 4547 CTGCATTTGATGGTACCAATATTTTTTTGATTACTTTTTCTGTTACAAGAATCCTTATAC 4606 Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC-GACACG 53895 | || | || || || ||||| | |||| ||| || || || ||| | ||| | Sbjct 4607 AACATATACGGTGTTCCTGTTTCTACTTGGGCTTCAATGATAGCAAACCAAAGTGACT-G 4665 Query 53896 AGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAA 53955 ||| || ||| | ||| | | |||| |||| ||| | ||| || |||||| Sbjct 4666 AGCTTTAATTTTCCTATTGAAACGGCCTTCTTTTTCATATTTTTCATATAACTCTTCAAA 4725 Query 53956 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 54015 || ||||||||||| | || | || ||||||| | |||||||| | ||||| || Sbjct 4726 TTCTTCTCCCCAAACTTCATCAAGCCCTGGACATTTGTGGGGACACATAAGTGACCAGTC 4785 Query 54016 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 54075 || ||| | || ||| |||| || |||||||||||||| || || ||||| || Sbjct 4786 GCCATCAGATTCTACGCGTCTCATGAACAGATCAGGAATCCAGAGGGCGTAAAATAAGTC 4845 Query 54076 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 54135 ||| | ||| |||||||| ||||||||||| ||||| | || | ||| | | |||||| Sbjct 4846 TCTTGCTCTGTGTTCCTCTTTTCCTGTATTTTTTTTTAAGTCTAAAAACTCGAAAATATC 4905 Query 54136 AGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 54195 |||||||| || || |||||||| | | | ||||||| ||| || ||||| || Sbjct 4906 CGAATGCCAAGGCTCTAAGTATATAGCAAACGCACCAGGCCTTTTTCCGCCACCCTGGTC 4965 Query 54196 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 54255 || || | || ||||| | || || ||||| || | | ||||| |||| || Sbjct 4966 TACATAACGTGCTACATTATTGAACACCCTTAACATAGGCACTAAGCCATTAGATGTGCC 5025 Query 54256 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCC 54315 ||| || ||| | || | |||| | || |||||| | || || || || || Sbjct 5026 ATTAGTGCCGCATATTGATGTTCCTTTAGCTCGAATACAATGAACATTTATTCCAATTCC 5085 Query 54316 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 54375 || || |||||| || | ||| || ||| | | | | | || || || || Sbjct 5086 TCCCGCTGATTTAGAAATCATTGCACACTGTTCAACTGATTTAAAAATTCCTTCAATTGA 5145 Query 54376 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 54435 ||| | | ||| |||| | |||||| || | || | || || ||| | || Sbjct 5146 ATCTGCTACCATTGTAAGCAAAAAACAAGATGATAACTGAGGGCGTCTTGTTGCAGCCGC 5205 Query 54436 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT 54495 |||||| || ||||| || || ||||| |||| ||||| || | |||||| || || || Sbjct 5206 AAATAAAGTTGGAGAGGCATGGGTAAAATATTTCTCAGAGAGCAAATTGTATGTTTCAAT 5265 Query 54496 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 || | || ||||| ||| ||||| | | || | ||| ||||||||||| || Sbjct 5266 TGCAGCATCGATATCTTCACCATGTATTCCAATCGATACTCTCATCAACATGTGCTGTGG 5325 Query 54556 TCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACC 54615 ||| || || | || || | ||| ||||| || || ||| | ||| ||||| || Sbjct 5326 TCTCTCCACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAAGCC 5385 Query 54616 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || |||||| |||||| || || || || || Sbjct 5386 AAAGTAATTGTATCCAAAGTCGCGGTCATATATGAT 5421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593265666340320