Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq10185 154 2e-32 seq32255 129 9e-25 seq4449 122 1e-22 seq56942 116 6e-21 seq4760 109 8e-19 seq32606 96.9 5e-15 >seq10185 Length=35228 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| || || || || |||||||| || | ||| | ||| | Sbjct 2766 AATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCTTC 2707 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| ||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 2706 GGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 2647 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || ||||| || ||| | || |||||| || ||||| Sbjct 2646 GCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGACTATAA 2587 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 ||| || ||||| ||||| | ||| |||| | || ||||| ||||| |||| Sbjct 2586 TATCCAGAAAGAGTCAACACTTCATCTGGTGCTCCGCTTACGTGGTGGAATTA 2534 >seq32255 Length=22131 Score = 129 bits (142), Expect = 9e-25 Identities = 317/483 (66%), Gaps = 2/483 (0%) Strand=Plus/Minus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 ||||||||||| || ||||||| | |||| |||| | | || ||||| || || | Sbjct 3801 ACATCAAATTTGCGCTTACATCCCTGATAATTCATGAAACGTATCTTACCGAAGATGGCA 3742 Query 202820 CTTTCTTTCCATGCTCTA-TCATGAATACCACAAATTGACCACATACATCCAACATATCC 202878 | || ||| || || ||||| | || | ||| ||||||||||| |||||||| || Sbjct 3741 CGCTCAGCCCA-GCCCTGGTCATGCACTCCGCCAATGGACCACATACAGCCAACATAGCC 3683 Query 202879 ATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGC 202938 | ||||||| |||||||||| |||||| ||||| || | ||| Sbjct 3682 ACTTGGATCGCGTCCATCTAAGCTATATTTGTCATTCAACAAAATGGCGTACTCCAGTGC 3623 Query 202939 TTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCC 202998 | ||| || |||| ||||||||| | || || || ||||||||||| | ||| | || Sbjct 3622 CTGTTCCGGCGATTCTGTCCATTCGAGAATCTTCTTCGCCCAATACATGCGCAAAAACCC 3563 Query 202999 ATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGT 203058 |||||||| || | | | || || ||||| | ||||||||||| ||| | || Sbjct 3562 GTGCATTTTGCCCTCGCGCACCAACTGCAATTGTGCGGAATTCCATAAATCGTCGTATGT 3503 Query 203059 TAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTTC 203118 || | || | | | | |||| | | | | || || ||| || Sbjct 3502 GCGTGACTGCTCCAACTCCTGCAGCGTATAGCAAGGCGAGCGTTTGTCCTTGCGATGATC 3443 Query 203119 ATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTATA 203178 || || ||||| |||||||| | ||| || | |||||||| ||| ||| || Sbjct 3442 GTTGAGCGTTTTAGCTGCCCAATCGTGCAGACCTTTCAGGTTATCGTAGTTTGGATTGTA 3383 Query 203179 ATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAACTTCTAC 203238 | | ||||||||||| || || || | |||||| |||||||||||| |||| || Sbjct 3382 AAAGCAAAAATTATCGGCCAGCTCACGCCGCACAATAGCCTCTTCACAAAAAGCTTCAAC 3323 Query 203239 CGA 203241 || Sbjct 3322 AGA 3320 >seq4449 Length=67262 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| ||||| |||||||| || ||| | ||| |||| | | Sbjct 64281 ATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 64340 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || ||||| || ||||| || || || || |||||| Sbjct 64341 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAA 64400 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| || ||||| | || ||| | || || | || || ||| Sbjct 64401 CAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAT 64460 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| |||||||||||||| || ||| |||| ||||| Sbjct 64461 ATCCAAAAAGAATCTACTTTGCATTTGGTGTTGCGTCTACGTGGTGG 64507 >seq56942 Length=2534 Score = 116 bits (128), Expect = 6e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || || || || || | || ||||| || Sbjct 53 AATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAACCATC 112 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| |||||||||||||||||| |||||||| || ||||| Sbjct 113 GGACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCAGATCA 172 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || || ||||| | || ||| | || ||||| || || || Sbjct 173 GCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGACTACAA 232 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||| || | || |||||||| ||| | || || ||| Sbjct 233 CATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGGT 281 >seq4760 Length=7449 Score = 109 bits (120), Expect = 8e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTAT-AACTATAGAGATTGAAGCAA 124596 ||||||||| ||| |||| || || | | ||||| || |||| | ||| | ||| | Sbjct 1854 AATGCAAATCTTTGTAAAAACTCTTAACGAGAAAACCATTAACT-TGGAGCTAGAACCTT 1912 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| | ||| ||||| |||||| |||||||||||||||| ||||| || | Sbjct 1913 CAGATACTACCGAAAATATAAAAGCTAAAATTTAAGATAAAGAAGGTATTCCACCAGAGC 1972 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | | |||||||| || || ||||| || || | || | ||||| || || | Sbjct 1973 AACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAAATGGACGCATATTAGCGGACTACA 2032 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||| | ||||| ||||| | ||| |||| | | || | |||||||||| Sbjct 2033 ATATCTAGAAAGATTCAACACTTCATCTGGTGCTCCAATTTTGTGGTGGTATTA 2086 >seq32606 Length=18579 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||| ||||||||||||||||||| ||||| || || ||| | | |||||||| || || Sbjct 7113 AAAGTTCAAGATAAAGAAGGTATTCCACCGGAGCAGCAACGTTTGATTTTTGCTGGTAAG 7172 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| | | |||||| || | |||||| || |||| ||||| | ||| Sbjct 7173 CAATTGGAAGATGGACACACATTATCTGACTTTAATATCCAGAAAGCGTCAACACTTCAT 7232 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||| | | ||| | |||||||||| Sbjct 7233 CTGGTGCTCCATTTTTGTGGTGGTATTA 7260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754875866451200