Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq24798 87.8 1e-12 seq56942 84.2 1e-11 >seq24798 Length=2166 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||| ||||||| | |||||||| ||||| ||| ||||| |||||||||||||| Sbjct 696 CCGGCGCGCAGGCGCAGCACCATGTGTACGACCGTTTGCTTCTGAATGTTGTAGTCGGAG 755 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | | | || ||| |||| ||||||||| ||||| | ||| ||||| |||||||| Sbjct 756 ATTTTAAGGCGGTCATCCAGCTGCTTGCCAGCGAACACGAGACGCTGATGGTCGAC 811 >seq56942 Length=2534 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || |||| ||| | || ||| || |||||||||||||||||| Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGAC 221 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | ||| ||||| ||||| || || || ||||| || || Sbjct 220 AATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGT 161 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || || ||| ||||| | || | |||| || | | ||| || Sbjct 160 ATACCCTCTTTATCTTGAAT-TTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAAC 102 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || || || || || |||||||||||||| ||||| Sbjct 101 TTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322830107311040