Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq37138 403 2e-107 seq56942 116 3e-21 seq4449 107 2e-18 seq10185 95.1 1e-14 >seq37138 Length=11844 Score = 403 bits (446), Expect = 2e-107 Identities = 1265/1944 (65%), Gaps = 41/1944 (2%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || ||||||||||| || || ||||| ||||| ||||| | ||||||||| || Sbjct 3563 TTATCAACAGTAAACTGTATTGCATTAGCGGCTGGTTTTGTGCGCAAATAATACATTCCA 3622 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || || || ||||| ||||| ||||| || || || || |||||||| | || Sbjct 3623 GTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGATGTTAACTTTCCATAGTTGGGT 3682 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | || | || || |||||||| ||||| ||||| ||||||| ||| || ||| Sbjct 3683 TCTGCAACGTGAATGTTAAAAGACTGACTTTGATCAATAAAAGCTCCTCTATCAGCTGCC 3742 Query 22286 ATATTTAT---CAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 || || || | || || | || |||||||| || |||||||| | | | || Sbjct 3743 ATTTTAATTGTCGATTTA---ACTGAAATTTCCCAAACTGTCTTGTATAAGTCACGAATG 3799 Query 22343 T-CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || | || || | ||| || | || | || || | ||| || |||||| Sbjct 3800 GACTTA-GGAATAGTTTCTATATTTTGTATAGAACCACGGCTTGATATAATTTGATTTTT 3858 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | || | ||| || | | |||| | |||| ||| || ||| | || || || Sbjct 3859 CATGTTGTCATCCCATAATTCAAGTTCGGTTAGATCTCTGAGAAGGTGATGATTAACAAC 3918 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 ||| || || || || || || || | ||| || || || || | ||||| || || Sbjct 3919 TTGGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAAGGTTCAAAGGA 3978 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 |||||| || || || || ||||| || || || || ||||| || || | |||| || Sbjct 3979 TTCATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCAACAAGTAAAGA 4038 Query 22582 GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATCGACCAGTCCCACAGATCG 22639 |||| | ||| | |||| |||| | ||| | |||| ||| ||||||| | Sbjct 4039 ATTTCGTATGCCATACTTTTGAATTCTCTCCTTTAAAGCATT--CCAATCCCACAAGTTT 4096 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 | ||||| ||||| |||||| |||||||| || | ||| || | || || ||| Sbjct 4097 GTTGGCGTAACATT---CCACATGTCGTATTGTAATATGCCTTTGCTTACAGGACTCCCT 4153 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCG 22759 || || | ||| || ||||| | | | || | ||| ||||| ||||| || || || Sbjct 4154 TCATATGATTCATAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAATGCTCCA 4213 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTT---CAATTCGGCGGCGGCGACGCTTTCGTAC 22816 || || || || || || |||| | || ||| | || || ||||||| || Sbjct 4214 TAGTAGATTGTTTCAAATATTTGTATATTTAGCAAATATGCTT--GCT-CGCTTTCATAT 4270 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 || |||||||| | | || || || | ||||||||| || || || || ||||| Sbjct 4271 GGATAACGCATCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGGTCGA 4330 Query 22877 TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 | ||| ||| || || || || || | |||||| |||| ||| || || | Sbjct 4331 TGCCTCATATTAGATTTCTTGGCTTCAGGAAGAGGATAATAATTTATATCTATGATTTTA 4390 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCC 22996 ||||| ||| | || ||| |||| |||| | ||| || ||| | | Sbjct 4391 TTCAAATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCTTTTGAAAATCATAA--GACT 4448 Query 22997 GATT-GTACAACA-AACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGT 23054 ||| | | || ||| |||| | || || || || |||||||| ||||| | ||| | Sbjct 4449 TATTAGCAGAAATGAACATGTTAAGAGCAATAGATGCTAGATTGCAAACGGCTATCTCAT 4508 Query 23055 CTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAAT 23114 || | | || || |||||||| ||||| | |||||| || || || || || | || Sbjct 4509 CTGGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGGTACCAATAT 4568 Query 23115 TGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCT 23174 | | || || ||||||| || || |||||||| || | ||| ||||| || || || | Sbjct 4569 TTTTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTGTTCCTGTTT 4628 Query 23175 CGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC 23234 | || || | || ||||| || ||| | | |||||| | || | | | | Sbjct 4629 CTACTTGGGCTTCAATGATAGCAAACCAAAGTGACTGAGCTTTAATTTTCCTATTGAAAC 4688 Query 23235 TGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCA 23294 |||||||| || || |||| || ||| | |||||||| | || || || | | Sbjct 4689 GGCCTTCTTTTTCATATTTTTCATATAACTCTTCAAATTCTTCTCCCCAAACTTCATCAA 4748 Query 23295 GGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCA 23354 | || || ||| |||||||| || ||| ||| ||| |||||||||| Sbjct 4749 GCCCTGGACATTTGTGGGGACACATAAGTGACCAGTCGCCATCAGATTCTACGCGTCTCA 4808 Query 23355 TAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGC 23414 | || ||||| || ||||| || ||||| || | || | || | |||||||| | Sbjct 4809 TGAACAGATCAGGAATCCAGAGGGCGTAAAATAAGTCTCTTGCTCTGTGTTCCTCTTTTC 4868 Query 23415 CGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAA 23474 | || || ||||| || || ||||| || || | |||| |||||| ||||| | ||| | Sbjct 4869 CTGTATTTTTTTTTAAGTCTAAAAACTCGAAAATATCCGAATGCCAAGGCTCTAAGTATA 4928 Query 23475 CGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGT 23534 |||||||| || || || || ||| ||||| || || ||||| || || ||| Sbjct 4929 TAGCAAACGCACCAGGCCTTTTTCCGCCACCCTGGTCTACATAACGTGCTACATTATTGA 4988 Query 23535 ACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACT--CGA 23592 |||| |||| ||| ||||| | || || || | ||| || ||| || | | | Sbjct 4989 ACACCCTTAACATAGGCACTAAGCCATTAGATGTGCC-ATTAGTGCCG-CATATTGATGT 5046 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||||| ||||||| ||||| | | || || ||||| | ||||| || ||||| Sbjct 5047 TCCTTTAGCTCGAATACAATGAACATTTATTCCAATTCCTCCCGCTGATTTAGAAATCAT 5106 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 || || |||| | | | | || || || || || || | | | ||| Sbjct 5107 TGCACACTGTTCAACTGATTTAAAAATTCCTTCAATTGAATCTGCTACCATTGTAAGCAA 5166 Query 23713 GAAACACGAAGACATTT----GCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 ||||| || || | | ||| || || || |||| || | || || || Sbjct 5167 AAAACAAGATGATAACTGAGGGCGTCTT----GTTGCAGCCGCAAATAAAGTTGGAGAGG 5222 Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828 | || ||||| ||| | || | | |||||| || || || || ||||| || || | Sbjct 5223 CATGGGTAAAATATTTCTCAGAGAGCAAATTGTATGTTTCAATTGCAGCATCGATATCTT 5282 Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC--CGTGAC 23886 | || ||||| || || | || | ||||| ||||| || |||||||| || | | | Sbjct 5283 CACCATGTATTCCAATCGATACTCTCATCAACATGTGCTGTGGTCTCTCCACAACTTTA- 5341 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 || |||| ||| | || ||||||||||| | || ||||| ||||| || | || Sbjct 5342 -CCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAAGTAATTGTATCC 5400 Query 23947 AAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTT 24006 |||||| || || | | || |||||||||||||||| ||| || | | | || Sbjct 5401 AAAGTCGCGGTCATATATGATTGCCGAATTCAAACGGTCCGCGTTTTCCCGAACTACATT 5460 Query 24007 GTAATGAAAATTCGATATCATCGG 24030 ||||||||| | ||||| || || Sbjct 5461 GTAATGAAAGTCAGATATTATAGG 5484 >seq56942 Length=2534 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| || || || || ||||| || || ||||| || | || |||||||| Sbjct 50 AAAAATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAACC 109 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | |||||| || ||| || || || || | ||||| || Sbjct 110 ATCGGACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCAGA 169 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 ||||| ||||| || ||||||||||||||| | ||||| | | | || || ||| | Sbjct 170 TCAGCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGA-TGGACGCACATTGTCCGACT 228 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | ||||| ||||| |||||||| ||||| |||| | | ||| | |||||| Sbjct 229 ACAACATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGGT 281 >seq4449 Length=67262 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| || || |||||||| ||||| | || ||||| || Sbjct 64278 AACATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 64337 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||||| |||||| | || |||||| || || | || || || Sbjct 64338 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 64397 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || |||||| | ||||| |||||||||||| ||||||| || | || || Sbjct 64398 CAACAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTAC 64457 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||||||||| ||| | ||| |||| Sbjct 64458 AATATCCAAAAAGAATCTACTTTGCATTTGGT 64489 >seq10185 Length=35228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||| |||||||| || ||||| ||||| || || ||||| || ||| | || || | Sbjct 2772 AAACAAA-ATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAG 2714 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 |||| || || | | |||| | || ||| | ||| || || ||||| | || | Sbjct 2713 AACCTTCGGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCAC 2654 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC- 31363 | || ||||| ||| | || || ||||| || || |||||||| | | | || | | Sbjct 2653 CAGATCAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGA-TGGACGCACATTATCT 2595 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || || ||||| || || ||||||||||| || Sbjct 2594 GACTATAATATCCAGAAAGAGTCAACACTTCATCTGGTGCT 2554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445424084837280