Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq37138 598 6e-166 >seq37138 Length=11844 Score = 598 bits (662), Expect = 6e-166 Identities = 1242/1842 (67%), Gaps = 14/1842 (1%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 64918 || ||||| || || | ||| |||||||| ||||| || || ||| | ||| |||| || Sbjct 3593 GCTGGTTTTGTGCGCAAATAATACATTCCAGTTTTAAGGCC-AGATTTCCAAGCGTAGAA 3651 Query 64919 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 64978 ||| || |||| || ||| | || ||||| | || || || | ||| ||||| Sbjct 3652 ATGAATTGATGTTAACTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAAAGACTGACT 3711 Query 64979 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 65038 |||||| || || ||||| || || || |||||||| || ||| || || |||||| Sbjct 3712 TTGATCAATAAAAGCTCCTCTATCAGCTGCCATTTTAATTGTCGATTTAACTGAAATTTC 3771 Query 65039 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTAT--TCTGAATGGA 65095 ||||| || || || || || | | ||| | | |||| ||| | || || || Sbjct 3772 CCAAACTGTCTTGTATAAGTCACGAATGGACTTAGGAATAGTTTCTATATTTTGTATAGA 3831 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 |||| || ||||| ||| || || | |||| |||||||| ||||||| Sbjct 3832 ACCACGGCTTGATATAATTTGATTTTTCATGTTGTCATCCCATAATTCAAGTTCGGTTAG 3891 Query 65156 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 65215 | |||| || || || ||||||| ||||| ||||| ||||| || || | || ||||| Sbjct 3892 ATCTCTGAGAAGGTGATGATTAACAACTTGGAATTCACCAGATAAAACACGCCTGGTGTA 3951 Query 65216 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 65275 |||||| ||||| ||||| | || |||||||| || | ||||||||| |||||||| Sbjct 3952 TATATTAGAAGTATAAGGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTGTTGATGC 4011 Query 65276 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 65335 || ||||| || || || | |||| ||||| | || || || ||| | || || Sbjct 4012 TGTAGGCATGGGAGCAACAAGTAAAGAATTTCGTATGCCATACTTTTGAATTCTCTCCTT 4071 Query 65336 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 65395 || || | ||||| ||| | | | || ||| ||||| || Sbjct 4072 TAAAGCATTCCAATCCCACAAGTTTGTTGGCGTAACATTCCACATGTCGTATTGTAATAT 4131 Query 65396 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 65454 || || || | | || ||| |||||| || || || || | || |||| || Sbjct 4132 GCCTTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGACCGAACACTTCCGCTAATT 4190 Query 65455 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 65514 |||| || ||||||||||| || || || || ||||| || || | ||||||| | Sbjct 4191 CACAGCTTGCCTCTAATGCTCCATAGTAGATTGTTTCAAATATTTGTATATTTAGCAAAT 4250 Query 65515 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 65574 ||||| | ||| ||| |||||||| | || |||| || ||||| || || |||| Sbjct 4251 ATGCTTGCTCGCTTTCATATGGATAACGCATCAGTATAAGTGCATCTGCAAAACCCTGAA 4310 Query 65575 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 65634 | ||||| || || |||| ||| ||| ||||||| | | ||||| |||| |||||||| Sbjct 4311 CTCCAATTCCTATGGGTCGATGCCTCATATTAGATTTCTTGGCTTCAGGAAGAGGATAAT 4370 Query 65635 AATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTT 65694 |||| |||||||| |||||||| | |||| | || ||| || || || || | Sbjct 4371 AATTTATATCTATGATTTTATTCAAATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCT 4430 Query 65695 TGAGAAAATCAAATCGCTCATCTATTACAAA----CATGTTCAATGCAACAGATGCCAGA 65750 | |||||||| | || || || | ||| |||||| | |||| |||||| ||| Sbjct 4431 TTTGAAAATCATAAGACTTAT-TAGCAGAAATGAACATGTTAAGAGCAATAGATGCTAGA 4489 Query 65751 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 65810 || |||||||||| ||||| | | | ||||| | || ||||| || | ||| || Sbjct 4490 TTGCAAACGGCTATCTCATCTGGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTG 4549 Query 65811 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 65870 || |||||||| || | ||||| ||||||||| ||| ||||||| | ||||||||| | Sbjct 4550 CATTTGATGGTACCAATATTTTTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAAC 4609 Query 65871 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC-GACTCGAGC 65929 || | || || || ||||| | || | ||| || || || ||| | |||| |||| Sbjct 4610 ATATACGGTGTTCCTGTTTCTACTTGGGCTTCAATGATAGCAAACCAAAGTGACT-GAGC 4668 Query 65930 CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989 || ||| | ||| | | |||| |||| ||| | ||| || ||| || || Sbjct 4669 TTTAATTTTCCTATTGAAACGGCCTTCTTTTTCATATTTTTCATATAACTCTTCAAATTC 4728 Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 66049 ||||||||||| | || | || ||||||| | |||||||| | ||||| || || Sbjct 4729 TTCTCCCCAAACTTCATCAAGCCCTGGACATTTGTGGGGACACATAAGTGACCAGTCGCC 4788 Query 66050 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCT 66109 ||| | || ||| |||| || |||||||||||||| || || |||||| ||||| Sbjct 4789 ATCAGATTCTACGCGTCTCATGAACAGATCAGGAATCCAGAGGGCGTAAAATAAGTCTCT 4848 Query 66110 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATA 66169 | ||| |||||||| ||||||||||| ||||| | || | ||| | | |||||| | Sbjct 4849 TGCTCTGTGTTCCTCTTTTCCTGTATTTTTTTTTAAGTCTAAAAACTCGAAAATATCCGA 4908 Query 66170 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 66229 |||||| || || |||||||| || | | ||||||| ||| || ||||| |||| Sbjct 4909 ATGCCAAGGCTCTAAGTATATAGCAAACGCACCAGGCCTTTTTCCGCCACCCTGGTCTAC 4968 Query 66230 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 66289 || | || ||||| | || || ||||| || | | ||||| ||||| ||||| Sbjct 4969 ATAACGTGCTACATTATTGAACACCCTTAACATAGGCACTAAGCCATTAGATGTGCCATT 5028 Query 66290 GGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCC 66349 || ||| | || | |||| | || |||||| | || || || ||||| || Sbjct 5029 AGTGCCGCATATTGATGTTCCTTTAGCTCGAATACAATGAACATTTATTCCAATTCCTCC 5088 Query 66350 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 66409 || |||||| || | ||| || ||| | | | | | || || || || ||| Sbjct 5089 CGCTGATTTAGAAATCATTGCACACTGTTCAACTGATTTAAAAATTCCTTCAATTGAATC 5148 Query 66410 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469 | | ||| |||| | |||||| || | || | || || ||| | || ||| Sbjct 5149 TGCTACCATTGTAAGCAAAAAACAAGATGATAACTGAGGGCGTCTTGTTGCAGCCGCAAA 5208 Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529 ||| || ||||| || || ||||| |||| ||||| || | |||||| || ||||| || Sbjct 5209 TAAAGTTGGAGAGGCATGGGTAAAATATTTCTCAGAGAGCAAATTGTATGTTTCAATTGC 5268 Query 66530 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589 | || ||||| ||| ||||| | | || | ||| ||||||||||| ||||| Sbjct 5269 AGCATCGATATCTTCACCATGTATTCCAATCGATACTCTCATCAACATGTGCTGTGGTCT 5328 Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649 || || | || || | ||| | ||| || || ||| | ||| ||||| ||||| Sbjct 5329 CTCCACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAA 5388 Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 || |||||| |||||| || || || || || |||| || Sbjct 5389 GTAATTGTATCCAAAGTCGCGGTCATATATGATTGCCGAATT 5430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657667372652560