Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq37138 190 2e-43 seq56942 150 2e-31 seq10185 102 8e-17 >seq37138 Length=11844 Score = 190 bits (210), Expect = 2e-43 Identities = 805/1256 (64%), Gaps = 38/1256 (3%) Strand=Plus/Plus Query 152754 GTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGAC 152813 || || ||||| ||||| || || || |||||| || ||| |||| | || | || Sbjct 3602 GTGCGCAAATAATACATTCCAGTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGAT 3661 Query 152814 GCCATCTTAGCCAAAGTAGGGT-CGGCCATGTACACGTTAAACGATTGACTTTGATCAAT 152872 | | ||| ||| ||| |||| | || | || | |||||| || |||||||||||||| Sbjct 3662 GTTAACTTT-CCATAGTTGGGTTCTGCAACGTGAATGTTAAAAGACTGACTTTGATCAAT 3720 Query 152873 AAATGCGCCTCTATCTGCTGCCATGTCGATCATGAATTTTCCGTTGTTGTGCCAGCATTC 152932 ||| || |||||||| |||||||| | || | |||| | || | ||| Sbjct 3721 AAAAGCTCCTCTATCAGCTGCCATTTTAATTGTCGATTTAAC-------TGAAAT--TTC 3771 Query 152933 CCAGATTGTCATGTACAGCTTTTTAATGTTGTCGGGAATTTCATCTATGGAAGCTATCGA 152992 ||| | |||| |||| | | |||| | ||||| ||||| ||| || Sbjct 3772 CCAAACTGTCTTGTATAAGTCACGAATGGACTTAGGAATAGTTTCTATATTTTGTATAGA 3831 Query 152993 TCCTCGGTTTGCCATGATCC--TTTTCCGCATACTACTTGTGTACAGATTCAA-TGCGAT 153049 || ||| ||| || || |||| | | | | || |||||| | || | Sbjct 3832 ACCACGGCTTGATATAATTTGATTTTTCATGTTGTCATCCCATA---ATTCAAGTTCGGT 3888 Query 153050 TAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAA 153109 |||||| || | || | || |||||||| ||||| || || || ||||| || Sbjct 3889 TAGATCTCTGAGAAGGTGATGATTAACAACTTGGAATTCACCAGATAAAACACGCCTGGT 3948 Query 153110 AAACAAATTACTGTGAAACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGT 153169 | | |||| | | |||||||| || || || || || ||||| || || | Sbjct 3949 GTATATATTAGAAGTATAAGGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTGTTGA 4008 Query 153170 GGCCGTCGGCATGTACGCCACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCAT 153229 || || |||||| || ||||| || ||||| |||| || | ||||| || || Sbjct 4009 TGCTGTAGGCATGGGAGCAACAAGTAAAGAATTTCGTATGCCATACTTTTGAATTCTCTC 4068 Query 153230 CTTCAATTGTGACCAGTCCCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAA 153289 ||| || ||| ||||| || || || | ||||||||| |||||||| || Sbjct 4069 CTTTAAAGCATTCCAATCCCACAAGTTTGTTGGCGTAACATTCCACATGTCGTATTGTAA 4128 Query 153290 TATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATACGGCTC----ACTGTCAGACG 153345 ||| |||| ||| | || || || | | ||| || | ||| || || Sbjct 4129 TATGCCTTTGCTTACAGGACTCCCTTCATATGATTCATAAGGACCGAACACT-TC---CG 4184 Query 153346 CCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCA 153405 | | || | || || || | || ||| || | ||||| | || ||| | || | Sbjct 4185 CTAATTCACAGCTTGCCTCTAATGCTCCATAGTAGATTGTTTCAAATATTTGTATATTTA 4244 Query 153406 GTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAAC 153465 | ||| || ||||| | || || |||| || | || |||||| || |||| Sbjct 4245 GCAAATATGCTTGCTCGCTTTCATATGGATAACGCATCAGTATAAGTGCATCTGCAAAAC 4304 Query 153466 CTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAG 153525 | |||| ||||| |||||||| ||||| | |||||||||||| || || | || || Sbjct 4305 CCTGAACTCCAATTCCTATGGGTCGATGCCTCATATTAGATTTCTTGGCTTCAGGAAGAG 4364 Query 153526 GATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAAT 153585 |||| |||| || || |||||||| ||| | | ||| ||| || | Sbjct 4365 GATAATAATTTATATCTATGATTTTATTCAAATTTTTTGTAACAGTTTTAGTTACTTCTT 4424 Query 153586 GCAACAGTTGAAAATCAAACGTTCCATTAAT-GATAT--ATTTGTTGACGGCAATCGACG 153642 | | |||||||||| | | |||| || || | |||| | ||||| || | Sbjct 4425 TAAGCTTTTGAAAATCATAAGACTTATTAGCAGAAATGAACATGTTAAGAGCAATAGATG 4484 Query 153643 CCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAAT 153702 | | ||||||||||| | || || || || |||||| || ||||| | |||||||| Sbjct 4485 CTAGATTGCAAACGGCTATCTCATCTGGCGCTGAATATTCGACAATTTCAGTACACAAAT 4544 Query 153703 TGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGT 153762 |||||||||| || || ||| ||||||| ||||| | |||||||| ||||| | Sbjct 4545 TGCTGCATTTGATGGTACCAATATTTTTTTGATTACTTTTTCTGTTACAAGAATCCTTAT 4604 Query 153763 ATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGCATCAATGTGA 153822 | | ||| || ||||| || ||||| |||| ||| || |||| | | ||| |||| Sbjct 4605 ACAACATATACGGTGTTCCTGTTTCTACTTGGGCTTCAATGATAG--CAAACCAAAGTGA 4662 Query 153823 CCGCG---GGCATTTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACCAGTATT 153879 | | | ||| | ||||| |||| | | ||| || | || || | | || Sbjct 4663 CTGAGCTTTAATTTTCCTATTGAAAC-GGCCTTCTTTTTCATATTTTTCATATAACTCTT 4721 Query 153880 CAAA--CTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGA 153937 |||| || || |||||| | | |||| | ||||||| || ||||||||| ||||| Sbjct 4722 CAAATTCTTCTCCCCAAAC--TTCATCAAGCCCTGGACATTTGTGGGGACACATAAGTGA 4779 Query 153938 CCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGT 153993 ||| ||||| || ||||| | ||| || | ||| |||| ||| ||||||| Sbjct 4780 CCAGTCGCCATCAGATTCTACGCGTCTCATGAACAGATCAGGAATCCAGAGGGCGT 4835 >seq56942 Length=2534 Score = 150 bits (166), Expect = 2e-31 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||||||| ||||||| ||| || || ||||| ||||| || ||| | Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGAC 221 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | |||||||||||||| ||||| ||||||||||||||||||| || || Sbjct 220 AATGTGCGTCCA-TCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGG 162 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||| || ||||| || ||| |||| | ||| | | || | ||||| | || || | Sbjct 161 TATACCCTCTTTATC-TTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAA 103 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | |||||| || |||| |||||| || || |||||||| Sbjct 102 CTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq10185 Length=35228 Score = 102 bits (112), Expect = 8e-17 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| || | || | |||| || |||||||| || || ||||| || Sbjct 2539 CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGAT 2598 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| | || ||||||||| | |||| |||||||||||| || || Sbjct 2599 AATGTGCGTCCA-TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 2657 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || |||||||| || ||| |||| | ||||| | || | || || | || || | Sbjct 2658 AATACCTTCTTTATC-TTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTA 2716 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTTT 139775 |||| | ||| | || || ||||| | |||||||| || ||||||| || ||||| Sbjct 2717 CCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCA----TTTTGTTT 2772 Query 139776 TACCT 139780 | ||| Sbjct 2773 TTCCT 2777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495683060052800