Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq37138 194 2e-44 seq56942 161 1e-34 seq10185 113 5e-20 seq4449 109 6e-19 >seq37138 Length=11844 Score = 194 bits (214), Expect = 2e-44 Identities = 696/1071 (65%), Gaps = 42/1071 (4%) Strand=Plus/Plus Query 156175 TGTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGA 156234 |||||| ||||| ||||| || ||||| ||||| |||||| |||| | || | || Sbjct 3601 TGTGCGCAAATAATACATTCCAGTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGA 3660 Query 156235 CGCCATTTTAGGCAAAGTAGGGTT-TGCCATGTACACGTTGAACGATTGACTTTGATCGA 156293 | | || || ||| ||||| ||| | || | ||| || || ||||||||||| | Sbjct 3661 TGTTAACTTTC-CATAGTTGGGTTCTGCAACGTGAATGTTAAAAGACTGACTTTGATCAA 3719 Query 156294 TAAATGCTCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTT 156353 |||| ||||| || || |||||||||| ||| | |||| | || |||||| Sbjct 3720 TAAAAGCTCCTCTATCAGCTGCCATTTTAATTGTCGATTTAAC--TG-------AAATTT 3770 Query 156354 CCCAGATTGTCATGTACAGCTTTTTTAGATTG---TCGGGAATTTTGGCGATAGAAGCTA 156410 |||| | |||| |||| | | || || | ||||| | | ||| || Sbjct 3771 CCCAAACTGTCTTGTATAAGTCAC---GAATGGACTTAGGAATAGTTTCTATATTTTGTA 3827 Query 156411 TCGATCCTCTGTTTGCCATGATTGTTTTTCGCATACTAT--TTGTATAGAGATTTAATTT 156468 | || || | | ||| || ||| ||| ||| | | | ||| ||| || || Sbjct 3828 TAGAACCACGGCTTGATATAATTTGATTTTTCATGTTGTCATCCCATA---ATTCAAGTT 3884 Query 156469 -GATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTC 156527 | ||||||| || | || | || |||||||| ||||| || || |||||||| | Sbjct 3885 CGGTTAGATCTCTGAGAAGGTGATGATTAACAACTTGGAATTCACCAGATAAAACACGCC 3944 Query 156528 TCAAAAACAAATTACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGG 156587 | | | |||| | | |||||||| || || || || || ||||| || | Sbjct 3945 TGGTGTATATATTAGAAGTATAAGGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTG 4004 Query 156588 TCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATAT 156647 | | || || |||||| || ||||| || ||||| |||| || || ||||| || Sbjct 4005 TTGATGCTGTAGGCATGGGAGCAACAAGTAAAGAATTTCGTATGCCATACTTTTGAATTC 4064 Query 156648 T-TATTTTCAACTGTGACCAGTCCCATAACGAAGTCGG--TACCGTATTCCACAAATCGT 156704 | | ||| || | ||| ||||| || || || || | |||||||| |||| Sbjct 4065 TCTCCTTTAAAGCATT-CCAATCCCACAAGTTTGTTGGCGTAAC--ATTCCACATGTCGT 4121 Query 156705 ATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCACTAACAG 156764 |||| ||||| |||| ||| | || || || | | |||||| | |||| Sbjct 4122 ATTGTAATATGCCTTTGCTTACAGGACTCCCTTCATATGATTCATAAGGACCG--AACAC 4179 Query 156765 AT--GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTT 156822 | || | ||| | || ||||| | || ||| || | |||||| |||||| | Sbjct 4180 TTCCGCTAATTCACAGCTTGCCTCTAATGCTCCATAGTAGATTGTTTCAAATATTTGTAT 4239 Query 156823 ATTCAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGC 156882 ||| | | | || ||||| | || || |||| || | || |||||| || Sbjct 4240 ATTTAGCAAATATGCTTGCTCGCTTTCATATGGATAACGCATCAGTATAAGTGCATCTGC 4299 Query 156883 CAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTC 156942 ||||| |||| ||||| || ||||| ||||| | |||||||||||| || || ||| Sbjct 4300 AAAACCCTGAACTCCAATTCCTATGGGTCGATGCCTCATATTAGATTTCTTGGC---TTC 4356 Query 156943 A---ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGAC 156999 | | ||| || |||| ||| || |||||||||||| | | ||| ||| Sbjct 4357 AGGAAGAGGATAATAATTTATATCTATGATTTTATTCAAATTTTTTGTAACAGTTTTAGT 4416 Query 157000 CACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTATT-GATAT--ATTTATTGACGGC 157056 || | | |||||||||| ||| | |||| || || | | || | || Sbjct 4417 TACTTCTTTAAGCTTTTGAAAATCATAAGACTTATTAGCAGAAATGAACATGTTAAGAGC 4476 Query 157057 AATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGC 157116 ||| || |||||||| || ||||| | || || ||||| |||||| || ||||| | Sbjct 4477 AATAGATGCTAGATTGCAAACGGCTATCTCATCTGGCGCTGAATATTCGACAATTTCAGT 4536 Query 157117 ACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGC 157176 |||||||||||||||||| || || ||| ||||||| ||||| | ||| |||| Sbjct 4537 ACACAAATTGCTGCATTTGATGGTACCAATATTTTTTTGATTACTTTTTCTGTTACAAGA 4596 Query 157177 GTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGAT 157227 ||||| || ||||| |||||||| || ||||| |||| ||| ||||| Sbjct 4597 ATCCTTATACAACATATACGGTGTTCCTGTTTCTACTTGGGCTTCAATGAT 4647 >seq56942 Length=2534 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||||||| || |||| || ||||| |||||||||||||| ||| | Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGAC 221 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | |||||||| ||||| ||||| ||||||||||||||||||| || || Sbjct 220 AATGTGCGTCCA-TCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGG 162 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||| || ||||| || |||||| ||| | | || | |||||||| ||||| || Sbjct 161 TATACCCTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAAC 102 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||| || |||| ||||| || || |||||||| Sbjct 101 TTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq10185 Length=35228 Score = 113 bits (124), Expect = 5e-20 Identities = 173/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| || | || | ||||| ||| || ||||| || || || || || Sbjct 2539 CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGAT 2598 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| | ||| ||||||||| | |||| |||||||||||| || || Sbjct 2599 AATGTGCGTCCA-TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 2657 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || |||||| ||||| | || | || |||| |||||||| Sbjct 2658 AATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTAC 2717 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTTT 143196 || | || | || || ||||| | |||||||| || ||||||| || |||||| Sbjct 2718 CTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCA----TTTTGTTTT 2773 Query 143197 ACCT 143200 ||| Sbjct 2774 TCCT 2777 >seq4449 Length=67262 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| |||||| || ||||| | |||||||||||||| || ||||| || Sbjct 64508 GCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGA 64449 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| || ||||| |||||| | |||| ||| || ||||| ||||| Sbjct 64448 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGG 64389 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||| || ||| | | ||| | || || | ||| || || Sbjct 64388 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAAC 64329 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || ||||| || | || || ||||| || ||||| Sbjct 64328 CTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCAT 64281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506625050966880