Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq27183 145 1e-29 seq5067 111 2e-19 seq23490 93.3 6e-14 seq17122 86.0 9e-12 >seq27183 Length=12736 Score = 145 bits (160), Expect = 1e-29 Identities = 385/580 (66%), Gaps = 6/580 (1%) Strand=Plus/Minus Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105 || || ||||| | ||| ||||||| ||||||| || || || || |||||| | || Sbjct 6717 GGTTTTACCGAACGCGAAGCGGGCGATTTGGGGCCGGTTTATGGCTTTCAGTGGCGCCAT 6658 Query 70106 TCGGGCACCAAGTATGTAGAC-TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163 | || |||| ||| |||| ||| | ||| ||||| || | || || ||||||| Sbjct 6657 TTTGGTGCCAAATATA-AGACATGCCATGAC-GACTACAGCGGCGAAGGCGTCGATCAAT 6600 Query 70164 TGCAGACAA-TCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222 |||| ||| | || |||| | || |||||||||||| | | || | |||| | Sbjct 6599 TGCA-ACAGGTTATAAACACCATACGCACAAATCCAACAGATCGACGCATTATTATGTCC 6541 Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAG 70282 | |||||||||| ||| | | |||||||| | || || ||||||||||| || || Sbjct 6540 GCTTGGAATCCTGTTGATATACCGCAAATGGCGTTGCCGCCATGTCACTGTTTAGCACAA 6481 Query 70283 TTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGC 70342 || | || |||| | | || || |||||||| | || ||||| ||||| Sbjct 6480 TTCTTTGTGTCTAATGGTGAGCTATCGTGTCAGTTGTATCAGCGCAGCGCCGATATGGGT 6421 Query 70343 CTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATT 70402 | || || ||||| || ||||| ||| | | || || | ||||| || ||||| Sbjct 6420 TTGGGCGTGCCCTTCAATATTGCCTCTTATGCGCTATTAACATATATGATAGCGCACATC 6361 Query 70403 ACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAAT 70462 || ||| |||| | ||| || || |||||| | ||||| | ||||| || |||| Sbjct 6360 ACAGGCTTGAAGCCCGGCGACTTTGTGCACACCCTCGGCGATACGCACGTCTACAAAAAT 6301 Query 70463 CACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAG 70522 ||| | || || | || | |||| | | || | || |||||||| || ||||| Sbjct 6300 CACGTTGAACCGCTCAAAGAGCAATTGGTCCGCAAACCAAGACCTTTCCCAAAGCTAATC 6241 Query 70523 TTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGT 70582 || || | || || ||||||| ||| || | ||| ||||| ||| || Sbjct 6240 ATTAAACGGCAGGTAGAGCATATTGAGGATTTCAAATTCGAGGATTTCGAGATAGTCGGC 6181 Query 70583 TACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTT 70622 ||| | || || || ||||| | |||| ||||||||| Sbjct 6180 TACAACCCCTATCCCAAGATACAAATGGAAATGGCTGTTT 6141 >seq5067 Length=25150 Score = 111 bits (122), Expect = 2e-19 Identities = 556/893 (62%), Gaps = 66/893 (7%) Strand=Plus/Minus Query 126672 CAGAGCACGATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGT 126731 || |||| |||||| || || || | ||||||||| || || || || || Sbjct 7343 CAAAGCAGCATCAATATACTCGACAACAAAGTCAATGTCAGTTTCAACGAGGCCGCGTGT 7284 Query 126732 CGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGG 126791 ||||| ||| || ||||| |||| ||||| ||| ||| ||| ||||| || || Sbjct 7283 CGTCAACGCTGGCGTACCAAGTCGTATGCCTGATGGATTGAACGCGGATTTGTCACCAGG 7224 Query 126792 TACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCC 126851 || |||||||| |||||||| || ||| ||| || ||| ||| || ||| || Sbjct 7223 CACGGTGTTTTTATTGCAAGCAATGCTGACTTCTTCCAGAATGTACTCAGCACGTGAACC 7164 Query 126852 TGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGT 126911 || || ||| | |||||||| ||||| | |||||| ||||| || || ||||||| Sbjct 7163 ATTTAGACCAACATTACGCAAATCGACTAGCACCAGATGTACATCTGTGCCACCAGTGGC 7104 Query 126912 GACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAACTGTGCATTTCGCACCACTCG 126971 | | ||||| ||| || ||||| ||| ||| |||||| | ||| | Sbjct 7103 AATGTCATAGCCACGTTTTTTTAGACCCTCACACAAGCGCTGAGCATTTTTGATAACTTG 7044 Query 126972 TCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTGGCGATCGCTGC 127031 | ||| || | || || | || || || | ||| || || || || | || Sbjct 7043 TTGTTGATACTCTTTGAATTCGGGTGTCTGAGCTTGTTTCATGGCTGTAGCAATGCCAGC 6984 Query 127032 AATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCTCGTTCAAT---TTC 127088 || | |||||||| || || ||||||| ||||||||| || || | | || ||| Sbjct 6983 GATGGCATGATTGTGTGGACCGCCTTGCAAGCCAGGAAATACAGCGCCATTTATGCGTTC 6924 Query 127089 CTGC----------------TCTAGTGATTTG-----------------------CGGTA 127109 || | | | | ||||| ||| | Sbjct 6923 CTCCAGATCGTACAAAATTTTATCGCCATTTGGCTTCACTTTGCGCACACCCTTGCGGAA 6864 Query 127110 AAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTC 127169 || | ||| || || || ||||| | | || ||||| ||||| ||| | |||| || Sbjct 6863 GAATACGACGCCAGCGCGTGGACCACGTAAGGTTTTGTGTGTTGTTGTGCTAACAACATC 6804 Query 127170 ACAATACTCAAAGGGGCCAGGAATGACTTTGCCC----GCAATCAAGCCCGCAATGTGTG 127225 ||||| || || || || | |||| |||| |||||| ||||| || | Sbjct 6803 GGCGTACTCGAATGGTGATGGTATAA----GCCCAGCGGCAACCAAGCCAGCAATATGAG 6748 Query 127226 CAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTATAGT 127285 | |||||||| | || | | | | || ||| || | ||||| || ||||| Sbjct 6747 CCATATCGGCGAAGAGGTAAGCGTCATTAGCGTCGCATATTTGCCGGAAGCGCGCATAGT 6688 Query 127286 CCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGG 127345 | | || || | |||||| | |||| || ||||| | | || || || | |||| Sbjct 6687 CGAGGCAACGCGAATAGCATGAGATGCCCGCAATGATAACTTTTGGCTTAAACAACTTGG 6628 Query 127346 CACTCTCGGC--AAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGG 127403 || || | | ||| | |||| || | || ||||| | | ||||||||||||||| Sbjct 6627 CATTCGCTTCCAAAGCAT--CATAATCAATTAGGCCAGTTTTGGCATCCACCTTGTACGG 6570 Query 127404 CATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT-------GCGG-----AATCCGTG 127451 |||||| |||||| | | || || ||||| || || |||| || || || Sbjct 6569 CATGCTCTCGAAATATATCGACGTTGCGGAGACTTTCTTCGACGCGGTCATAAAACCATG 6510 Query 127452 CGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGtt 127504 |||| || || || || || |||||||| ||||| || | | | || |||| Sbjct 6509 TGTCAAATGACCACCATCCGGAAGATCGAGACCCATTATGCGATCATGTGGTT 6457 >seq23490 Length=8724 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGC-ATCCTTTCCGAGTGCACTCACCGGAGCCGA 50193 ||||| | ||||| | ||||| ||||| || || | | | || |||| || || || Sbjct 6682 TGGCCGCTGGAGTACGTCATCTATACGGCCATACTGCCGGCG-GCTGTCACTGGCGCTGA 6740 Query 50194 TTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCG 50253 | | | || ||||| | ||||||||||||||| | || ||||| || || |||| || Sbjct 6741 TGTTGCTATTTTCGCGTCCTGCTTTGCCTACATTTCGGACGTGTCAACGTTGAAGAACCG 6800 Query 50254 CACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGC 50313 |||||| || || ||| ||||||| || ||||| | |||||||||||||| || Sbjct 6801 CACGCTTCGTGTCACCATATTGGATGTGTGTTATTTGAGCGCCATGCCAACCGGTGTAGC 6860 Query 50314 GATCGGTA 50321 | | |||| Sbjct 6861 GCTGGGTA 6868 >seq17122 Length=8340 Score = 86.0 bits (94), Expect = 9e-12 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 134236 ATACGCTCACAAATCAGTTGTGCGATGCGATCACC---CTTTGACACTACAAAGTCGTCA 134292 || ||||||||||| | ||| || |||||||| || ||| ||| ||||| || ||| Sbjct 2300 ATGCGCTCACAAATGAATTGCGCAATGCGATCGCCGCGCTT---CACGACAAATTCTTCA 2244 Query 134293 TCGGAATGGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCG 134352 |||||||| || || || || || || | || || |||||| ||| || || || Sbjct 2243 TCGGAATGATTGAACAGTACAACGCCTAAATTGCCGCGATAGTCTTCGTCGACAACGCCA 2184 Query 134353 GCTCCGACGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTA 134411 || ||||| ||||| | |||| | |||||| || || || ||||| | |||||| Sbjct 2183 GCACCGACATCGATGAAATTCTTGACAGCCAGTCCTGAGCGTGGCGCAATACGACCGTA 2125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740490122113840