Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10185 125 5e-24 seq4760 120 2e-22 seq56942 107 1e-18 seq2705 87.8 1e-12 seq4449 86.0 5e-12 >seq10185 Length=35228 Score = 125 bits (138), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || ||||| || || || || || || | | | ||||| ||||| Sbjct 2562 ATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCTTCCAATTG 2621 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||||||||| || || |||||| |||||||| || |||||| Sbjct 2622 CTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCTTGAATTTT 2681 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| |||||| | || || ||||| | |||||| || |||||||| ||||| || | Sbjct 2682 AGCT-TTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGTTTTCCCGG 2740 Query 15339 TCAGAGTTTTTACAAAAATTTGCATATT 15366 | |||||||||||||| |||||||| || Sbjct 2741 TAAGAGTTTTTACAAAGATTTGCATTTT 2768 >seq4760 Length=7449 Score = 120 bits (132), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || |||||||| | || ||||| || || || | | | ||| ||||| Sbjct 2058 ATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCATTTTCCAATTG 1999 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | |||||||||||||| || |||||| |||||||| || ||||||| Sbjct 1998 CTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCTTAAATTTT 1939 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| |||| | |||| | ||||| | ||||| || ||| |||||||||| | Sbjct 1938 AGCT-TTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGTTTTCTCGT 1880 Query 15339 TCAGAGTTTTTACAAAAATTTGCATATT 15366 | |||||||||||||| |||||||| || Sbjct 1879 TAAGAGTTTTTACAAAGATTTGCATTTT 1852 >seq56942 Length=2534 Score = 107 bits (118), Expect = 1e-18 Identities = 162/223 (73%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 ||||| || ||||| || || || |||||||||||||| ||| | ||| || | | Sbjct 265 AAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGG--ACAATGTGCGTCCAT 208 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | |||||||||||| | |||| |||||| || || || || || ||||| | Sbjct 207 CTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTTAT 148 Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAAT 15327 | |||||| ||| || ||| | || || || || | || ||| || || | ||||| Sbjct 147 CTTGAATTTTCGCT-TTGACATTCTCAATCGTGTC-CGATGGTTCAACTTCCAGCGTAAT 90 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15370 || ||||| ||||| ||||| ||||| |||||||| ||| || Sbjct 89 CGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCATTTTTCAA 47 >seq2705 Length=26899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| ||||| | ||||| | || |||||||| || || |||||| || | ||| || Sbjct 26028 TTCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATC 26087 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| |||||| | || || || ||| | |||||| | ||||||||||| Sbjct 26088 TTGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGT 26147 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || | |||||||||||||| |||||||| || Sbjct 26148 TTTCCCGGGAAGAGTTTTTACAAAGATTTGCATTTT 26183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | || |||||||| || || |||||| || | ||| || ||||| Sbjct 26527 CCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGATTTTAGAT 26586 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | || || || ||| | |||||| | |||||||||||||| || | ||| Sbjct 26587 TTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCCGGGAAGA 26646 Query 15344 GTTTTTACAAAAATTTGCATATT 15366 ||||||||||| |||||||| || Sbjct 26647 GTTTTTACAAAGATTTGCATTTT 26669 >seq4449 Length=67262 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || |||||||| || ||||| || || | | | ||| Sbjct 64492 AACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCT 64433 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||||||||| |||||||||| ||||| || |||||||| |||||||| Sbjct 64432 TCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCC 64373 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| || ||| |||| || ||||| || || || | || |||||| Sbjct 64372 TGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTT 64313 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || || || || || || ||||| || Sbjct 64312 TTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTT 64278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361908026699394