Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28]
61,434 sequences; 410,872,512 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq10185 125 5e-24
seq4760 120 2e-22
seq56942 107 1e-18
seq2705 87.8 1e-12
seq4449 86.0 5e-12
>seq10185
Length=35228
Score = 125 bits (138), Expect = 5e-24
Identities = 154/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||| || || ||||| || || || || || || | | | ||||| |||||
Sbjct 2562 ATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCTTCCAATTG 2621
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
|| ||||| | ||||||||||| || || |||||| |||||||| || ||||||
Sbjct 2622 CTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCTTGAATTTT 2681
Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| |||||| | || || ||||| | |||||| || |||||||| ||||| || |
Sbjct 2682 AGCT-TTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGTTTTCCCGG 2740
Query 15339 TCAGAGTTTTTACAAAAATTTGCATATT 15366
| |||||||||||||| |||||||| ||
Sbjct 2741 TAAGAGTTTTTACAAAGATTTGCATTTT 2768
>seq4760
Length=7449
Score = 120 bits (132), Expect = 2e-22
Identities = 153/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||| || |||||||| | || ||||| || || || | | | ||| |||||
Sbjct 2058 ATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCATTTTCCAATTG 1999
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
|| ||||| | |||||||||||||| || |||||| |||||||| || |||||||
Sbjct 1998 CTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCTTAAATTTT 1939
Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| |||| | |||| | ||||| | ||||| || ||| |||||||||| |
Sbjct 1938 AGCT-TTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGTTTTCTCGT 1880
Query 15339 TCAGAGTTTTTACAAAAATTTGCATATT 15366
| |||||||||||||| |||||||| ||
Sbjct 1879 TAAGAGTTTTTACAAAGATTTGCATTTT 1852
>seq56942
Length=2534
Score = 107 bits (118), Expect = 1e-18
Identities = 162/223 (73%), Gaps = 8/223 (4%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
||||| || ||||| || || || |||||||||||||| ||| | ||| || | |
Sbjct 265 AAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGG--ACAATGTGCGTCCAT 208
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
|||| | |||||||||||| | |||| |||||| || || || || || ||||| |
Sbjct 207 CTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTTAT 148
Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAAT 15327
| |||||| ||| || ||| | || || || || | || ||| || || | |||||
Sbjct 147 CTTGAATTTTCGCT-TTGACATTCTCAATCGTGTC-CGATGGTTCAACTTCCAGCGTAAT 90
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15370
|| ||||| ||||| ||||| ||||| |||||||| ||| ||
Sbjct 89 CGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCATTTTTCAA 47
>seq2705
Length=26899
Score = 87.8 bits (96), Expect = 1e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270
||| ||||| | ||||| | || |||||||| || || |||||| || | ||| ||
Sbjct 26028 TTCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATC 26087
Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
||||| |||||| | || || || ||| | |||||| | |||||||||||
Sbjct 26088 TTGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGT 26147
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
||| || | |||||||||||||| |||||||| ||
Sbjct 26148 TTTCCCGGGAAGAGTTTTTACAAAGATTTGCATTTT 26183
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | || |||||||| || || |||||| || | ||| || |||||
Sbjct 26527 CCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGATTTTAGAT 26586
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | || || || ||| | |||||| | |||||||||||||| || | |||
Sbjct 26587 TTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCCGGGAAGA 26646
Query 15344 GTTTTTACAAAAATTTGCATATT 15366
||||||||||| |||||||| ||
Sbjct 26647 GTTTTTACAAAGATTTGCATTTT 26669
>seq4449
Length=67262
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||| | || || |||||||| || ||||| || || | | | |||
Sbjct 64492 AACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCT 64433
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| | ||||||||||| |||||||||| ||||| || |||||||| ||||||||
Sbjct 64432 TCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCC 64373
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||| ||| || ||| |||| || ||||| || || || | || ||||||
Sbjct 64372 TGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTT 64313
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| || || || || || || || || ||||| ||
Sbjct 64312 TTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTT 64278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361908026699394
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |