Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq59377 109 2e-19 >seq59377 Length=1420 Score = 109 bits (120), Expect = 2e-19 Identities = 230/340 (68%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 53060 CTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAG--GGCTTCGTCTATGTGGCGT 53117 || ||||| ||||| || || |||||||| || || | |||||||| ||||| || | Sbjct 866 CTCTGGGTAGCTGACTTCACCTACGTCAGAACC--GCCGTCGGCTTCGTGTATGTTGCCT 923 Query 53118 TCATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTCTCATCGTCCATGGAGA 53177 ||||||||||||| || || | |||||||| || ||| ||||| || ||| | | Sbjct 924 TCATCATTGATGTCTTCGCGCGCTACATTGTTGGTTGGAAAGTCTCTTCTTCCCCGAATG 983 Query 53178 CGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCG--TCCGG--- 53232 | | | || || || || |||| || ||| | || |||| |||| ||| | Sbjct 984 CCCGAATGGTTCTCGACGCTTTGGATCAAGCGCTGGCTGCGCGTCAACCGGATCCCGAAA 1043 Query 53233 -CACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGC 53291 | ||||||| ||||| | || ||| ||| | ||| | |||||| |||| | Sbjct 1044 CCCTCATCCATCATAGTGACAGGGGCGTTCAATATTTGTCGATCAAGTACACAGAGCGTC 1103 Query 53292 TTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGA 53351 | |||||||| | | | ||| || ||| || ||| |||||||| |||| Sbjct 1104 TCGAGGAAGCCAAAATCGATCCGTCAGTCGGTAGTGTCGGTGACAGCTATGACAATGCGA 1163 Query 53352 TGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAAT 53391 |||| |||| ||||| ||||| ||||| || ||||| || Sbjct 1164 TGGCCGAGACAATCAACGGTCTCTACAAGGCTGAGGTCAT 1203 Score = 104 bits (114), Expect = 9e-18 Identities = 227/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 50223 TGGGTGGCTGATTTTACCTGGGTAAGCACATGGCAG--GGCTTCGTTTATGTGGCGTTCA 50280 ||||| ||||| || |||| || || || || | |||||||| ||||| || |||| Sbjct 869 TGGGTAGCTGACTTCACCTACGTCAGAACC--GCCGTCGGCTTCGTGTATGTTGCCTTCA 926 Query 50281 TCATTGATGTGTTCGCCGGATACATCGTGGGATGGCAGGTCTCATCATCCATGGAAACAA 50340 |||||||||| ||||| | ||||| || || ||| | ||||| || ||| | | | Sbjct 927 TCATTGATGTCTTCGCGCGCTACATTGTTGGTTGGAAAGTCTCTTCTTCCCCGAATGCCC 986 Query 50341 CATTCGTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCCG--TCCGG----CA 50394 | | || || || || |||| || ||| || || |||| ||| ||| | | Sbjct 987 GAATGGTTCTCGACGCTTTGGATCAAGCGCTGGCTGCGCGTCAACCGGATCCCGAAACCC 1046 Query 50395 CAATCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCTTA 50454 |||||||| ||||| | || ||| ||| | ||| | ||||| |||| || Sbjct 1047 TCATCCATCATAGTGACAGGGGCGTTCAATATTTGTCGATCAAGTACACAGAGCGTCTCG 1106 Query 50455 AGGAAGCCGGATTACTGGCATCAACAGGGAGTACTGGCGACTCGTATGACAACGCGATGG 50514 |||||||| | | | ||| || ||| || ||| |||||||| ||||||| Sbjct 1107 AGGAAGCCAAAATCGATCCGTCAGTCGGTAGTGTCGGTGACAGCTATGACAATGCGATGG 1166 Query 50515 CTGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAAT 50551 | |||| ||||| ||||| ||||| || ||||| || Sbjct 1167 CCGAGACAATCAACGGTCTCTACAAGGCTGAGGTCAT 1203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185119251589136