Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq10185 118 7e-22 seq4449 109 3e-19 >seq10185 Length=35228 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| || | ||||| ||| | ||| |||||||| || ||||| || ||||| Sbjct 2539 CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGAT 2598 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || || || ||||||||||| ||| ||| || ||||||||||| || | || Sbjct 2599 AATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 2658 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| |||||| | | || || || |||| || Sbjct 2659 ATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACC 2718 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| || || ||||| || |||||||||||||| || |||||||| || Sbjct 2719 TCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTT 2768 >seq4449 Length=67262 Score = 109 bits (120), Expect = 3e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||||||||| || || |||||||| |||||||| ||||| | || | Sbjct 64495 CGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCA 64436 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || ||| |||||| ||||| || || || | || || || ||||| Sbjct 64435 TCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTG 64376 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || ||| || || || ||| | ||| || ||||| || Sbjct 64375 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATG 64316 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| ||||| || || || ||||| || |||||||| Sbjct 64315 GTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTT 64278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318538922643732