Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq10185 122 6e-23 seq4760 82.4 5e-11 >seq10185 Length=35228 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| ||| || || |||||| || |||||||| || |||| || |||| || Sbjct 2556 CACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCTTC 2615 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| || || ||||| ||||| |||||||| || | || | ||||||||||||| Sbjct 2616 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCTTG 2675 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||| || | | | |||||| | || || || || | ||||| ||||| Sbjct 2676 AATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGTTTT 2735 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||| || ||||| |||||||| Sbjct 2736 CCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 >seq4760 Length=7449 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| ||| || || ||||| | ||||| || || |||| || ||| || Sbjct 2064 CACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCATTTTC 2005 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| || || ||||| ||||| ||||| || || | || | ||||||||||||| | Sbjct 2004 CAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCTTA 1945 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| ||| | | | |||||||| || || | || | |||| ||||| Sbjct 1944 AATTTTAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGTTTT 1885 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | | ||| || ||||| |||||||| Sbjct 1884 CTCGTTAAGAGTTTTTACAAAGATTTGCAT 1855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354511968476232