Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10185 185 2e-41 seq4449 161 2e-34 seq56942 131 4e-25 seq4760 123 6e-23 seq2705 114 3e-20 seq32606 96.9 8e-15 seq32255 95.1 3e-14 >seq10185 Length=35228 Score = 185 bits (204), Expect = 2e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | ||| || |||||||| |||||||||||| Sbjct 2536 ATTCCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCA 2595 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||| | ||| || ||||||||||| | | || ||||| || Sbjct 2596 GATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGT 2655 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| || ||||||||||| || | ||||| ||||||| Sbjct 2656 GGAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCT 2715 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| | |||||||| || || ||||| ||||||||||| || |||||||||| Sbjct 2716 ACCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTTGT 2770 >seq4449 Length=67262 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || ||||||||||| || ||||| |||||||| || || | || ||||| || || Sbjct 64484 ATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 64425 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| || | | ||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 64424 TTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTT 64365 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| |||||||| | ||||| || || ||||| || || || || || || || Sbjct 64364 GGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTTTTGCCCGT 64305 Query 104536 AAGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || || |||||||| |||| Sbjct 64304 TAGGGTCTTAACGAAGATCTGCATGTTGT 64276 >seq56942 Length=2534 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||| || | || | || ||||| || ||||| ||| Sbjct 250 GTCGATTCCTTTTGTATGTTGTAGTCGGACAATGTGCGTCCATCTTCGAGCTGTTTGCCA 191 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || ||||| || ||||| || |||||||| ||||| || ||||| Sbjct 190 GCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTTATCTTGAATTTTCGCTTTG 131 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || ||||| || || || ||||| ||||||||||| || ||| Sbjct 130 ACATTCTCAATCGTGTCCGATGGTTCAACTTCCAGCGTAATCGTCTTACCAGTCAGCGTT 71 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| || |||||||| Sbjct 70 TTCACAAAGATTTGCATTTT 51 >seq4760 Length=7449 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||| || ||||||| ||||| ||||| | || | | || | | Sbjct 2066 AGCACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCATTT 2007 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||||||||| | | ||||| || || || || ||||||||||| Sbjct 2006 TCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCT 1947 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 | ||| || ||||||| |||||| ||||| |||||||| ||| | |||| || Sbjct 1946 TAAATTTTAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGTT 1887 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | |||| ||||||||||| || ||||||||| Sbjct 1886 TTCTCGTTAAGAGTTTTTACAAAGATTTGCATTTTG 1851 >seq2705 Length=26899 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || ||| |||| |||||| |||||| || || || | | Sbjct 25969 AGCACCAGTTGAAGTGTTGACTCTCTCTGGATATTAGAGTCAGTTAATGTGTGTCCATTT 26028 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| | |||||| |||||| | || ||| | || || || || | |||||| Sbjct 26029 TCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCT 26088 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || | ||||||||| || | || ||| |||||||||| | | ||||| || Sbjct 26089 TGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTT 26148 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || | ||| ||||||||||| || ||||||||| Sbjct 26149 TTCCCGGGAAGAGTTTTTACAAAGATTTGCATTTTG 26184 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||| |||||| | || ||| | || || || || | |||||| || || || | | Sbjct 26527 CCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGATTTTAGAT 26586 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | || ||| |||||||||| | | ||||| || || || | ||| Sbjct 26587 TTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCCGGGAAGA 26646 Query 104540 GTTTTTACAAATATCTGCATTTTG 104563 ||||||||||| || ||||||||| Sbjct 26647 GTTTTTACAAAGATTTGCATTTTG 26670 >seq32606 Length=18579 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||| || ||||||| |||||| ||||||||| || || ||| Sbjct 7240 AGCACCAGATGAAGTGTTGACGCTTTCTGGATATTAAAGTCAGATAATGTGTGTCCATCT 7181 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||||||||| | | || || || || || || ||||||||||| Sbjct 7180 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGCTCCGGTGGAATACCTTCTTTATCT 7121 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||| |||| | || ||||| || || | | ||||||||||| | ||||| || Sbjct 7120 TGAA-CTTTTCATTAACATTCTCGACACAAGCCGAAGGTTCTACCTTCAAGGTAATGGTT 7062 Query 104528 TTACC 104532 || || Sbjct 7061 TTCCC 7057 >seq32255 Length=22131 Score = 95.1 bits (104), Expect = 3e-14 Identities = 203/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 238591 TATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAA 238650 ||||||||||||| || | || |||| | ||||||||||| | || || || | Sbjct 3516 TATGGAATTCCGCACAATTGCAGTTGGTGCGCGAGGGCAAAATGCACGGGTTTTTGCGCA 3575 Query 238651 TGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATA 238710 |||||||||| || ||||| || |||||||| ||| || | | || || || Sbjct 3576 TGTATTGGGCGAAGAAGATTCTCGAATGGACAGAATCGCCGGAACAGGCACTGGAGTACG 3635 Query 238711 GTATTTATCTGAACGATAAATACGAACTCGACGGTACG-GATCCTAACGGATACGTAGGT 238769 |||| |||| || ||||| | || || ||| ||||| | || || || || Sbjct 3636 CCATTTTGTTGAATGACAAATATAGCTTAGATGG-ACGCGATCCAAGTGGCTATGTTGGC 3694 Query 238770 TGTATGTGGTCAATATGTGGATTACACGA-TAGGGCATGGTCTGAGAGACCTATATTTGG 238828 ||||||||||| || | ||| | || || ||||| ||| ||||| | | || || || Sbjct 3695 TGTATGTGGTCCATTGGCGGAGTGCATGACCAGGGC-TGGGCTGAGCGTGCCATCTTCGG 3753 Query 238829 AAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTT 238886 || | | | |||||||||| | ||| |||| ||||||||||| ||||||| Sbjct 3754 TAAGATACGTTTCATGAATTATCAGGGATGTAAGCGCAAATTTGATGTGGCTGCTTTT 3811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150492107693272