Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4076 118 2e-22 seq19642 114 2e-21 seq21539 113 7e-21 >seq4076 Length=11384 Score = 118 bits (130), Expect = 2e-22 Identities = 187/268 (70%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||||| ||| || |||||||| ||||| || || |||||||| || Sbjct 4158 GCTAAGCGCCATCGCAAGGTTCTACGCGATAACATTCAAGGTATTACTAAGCCAGCAATT 4099 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||||||||||| || ||||| |||| || || | |||||||| | Sbjct 4098 AGACGTTTGGCTCGTCGTGGTGGTGTGAAGCGCATCTCCGGCTTAATATATGAAGAAACA 4039 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | || | | | ||||| |||| || | || || || Sbjct 4038 CGTGGTGTGCTGAAAGTATTTTTAGAAAATGTTATTAGTGATACTGTAACATACACTGAA 3979 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||||||| | || | | | |||||| |||||| | |||| | Sbjct 3978 CATGCCAAAAGCTGGACTGTCACTGCTTTGAACGTTGCCTATGCTTTGAAAAGACAAGAC 3919 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||| | ||||| || || |||||| Sbjct 3918 TGTAGTCTATATGGATTCGGCGGTTAAT 3891 >seq19642 Length=46042 Score = 114 bits (126), Expect = 2e-21 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||| || | |||||| || |||||||||||| || ||||||||||| |||||| | || Sbjct 22922 CGTCATTCGTGATGCGGTCACCTATACCGAGCATGCAAAACGTAAGACCGTCACCGCTAT 22863 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || |||||||||||||||||||||| | || ||||||||| ||||| Sbjct 22862 GGATGTGGTATACGCATTGAAACGTCAAGGCCGTACATTATACGGTTTTGGAGGTTAA 22805 Score = 114 bits (126), Expect = 2e-21 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | | || |||||||| ||||| |||||||||||||| || Sbjct 23139 GCTAAGCGCCATCGTAAGGTTTTGCGTGATAACATTCAAGGTATCACCAAGCCAGCCATA 23080 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || |||||||| |||||||||||| | ||||| ||| | |||||||| | | Sbjct 23079 CGTCGTTTAGCCCGTCGTGGCGGAGTCAAGCGTATATCTGGGTTGATTTATGAAGAAACT 23020 Query 16553 CGTGATGT 16560 || | ||| Sbjct 23019 CGAGGTGT 23012 >seq21539 Length=8475 Score = 113 bits (124), Expect = 7e-21 Identities = 178/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 16442 CATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTG 16501 ||||||| ||| || |||||||| ||||| || || |||||||| || ||| || Sbjct 7092 CATCGCAAGGTTCTACGCGATAACATTCAAGGTATTACTAAGCCAGCAATTATACGTTTG 7033 Query 16502 GCTCGTCGTGGTGGAGTCAAGCGTG----TCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 ||||||||||||| || ||||| | |||| || || | |||||||| | |||| Sbjct 7032 GCTCGTCGTGGTGATGTGAAGCGNGCGCATCTCCGGCTTAATATATGAAGAAACACGTGG 6973 Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| |||| | || | | | ||||| ||||||| | | || || || || Sbjct 6972 TGTGCTGAAAGTATTTTTAGAAAATGTTATTTGTGATGCTGTAACATGCACTGAACATGC 6913 Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAA 16677 ||| | ||||| ||||| | ||| || | |||||||| |||||| | |||||||||| Sbjct 6912 CAAAAGCAAGACAGTCACTGCTATGCATGTTGTCTATGCTTTGAAAAGACAAGGCCGTAT 6853 Query 16678 GATTTATGGTTTTGG 16692 | ||||| || || Sbjct 6852 TCTATATGGATTCGG 6838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79019030463762