Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq37138 580 1e-160 >seq37138 Length=11844 Score = 580 bits (642), Expect = 1e-160 Identities = 1238/1842 (67%), Gaps = 14/1842 (1%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAA 62074 || ||||| || || | ||| |||||||| ||||| || || ||| | ||| |||| || Sbjct 3593 GCTGGTTTTGTGCGCAAATAATACATTCCAGTTTTAAGGCC-AGATTTCCAAGCGTAGAA 3651 Query 62075 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62134 ||| || |||| || ||| | || ||||| | || || || | ||| ||||| Sbjct 3652 ATGAATTGATGTTAACTTTCCATAGTTGGGTTCTGCAACGTGAATGTTAAAAGACTGACT 3711 Query 62135 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 62194 |||||| || || ||||| || || || |||||||| || ||| || || |||||| Sbjct 3712 TTGATCAATAAAAGCTCCTCTATCAGCTGCCATTTTAATTGTCGATTTAACTGAAATTTC 3771 Query 62195 CCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTAT--TCTGAATGGA 62251 ||||| || || || || || | | ||| | | |||| ||| | || || || Sbjct 3772 CCAAACTGTCTTGTATAAGTCACGAATGGACTTAGGAATAGTTTCTATATTTTGTATAGA 3831 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| || ||||| ||| || || | |||| |||||||| ||||||| Sbjct 3832 ACCACGGCTTGATATAATTTGATTTTTCATGTTGTCATCCCATAATTCAAGTTCGGTTAG 3891 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | |||| || || || ||||||| ||||| ||||| ||||| || || | || ||||| Sbjct 3892 ATCTCTGAGAAGGTGATGATTAACAACTTGGAATTCACCAGATAAAACACGCCTGGTGTA 3951 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 |||||| ||||| ||||| | || |||||||| || | ||||||||| |||||||| Sbjct 3952 TATATTAGAAGTATAAGGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTGTTGATGC 4011 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62491 || ||||| || || || | |||| ||||| | || || || ||| | || || Sbjct 4012 TGTAGGCATGGGAGCAACAAGTAAAGAATTTCGTATGCCATACTTTTGAATTCTCTCCTT 4071 Query 62492 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 62551 || || | ||||| ||| | | | || ||| ||||| || Sbjct 4072 TAAAGCATTCCAATCCCACAAGTTTGTTGGCGTAACATTCCACATGTCGTATTGTAATAT 4131 Query 62552 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 62610 || || || | | || ||| |||||| || || || || | || |||| || Sbjct 4132 GCCTTTGCTTACAGGACTC-CCTTCATATGATTCATAAGGACCGAACACTTCCGCTAATT 4190 Query 62611 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62670 |||| || ||||||||||| || || || || ||||| || || | ||||||| | Sbjct 4191 CACAGCTTGCCTCTAATGCTCCATAGTAGATTGTTTCAAATATTTGTATATTTAGCAAAT 4250 Query 62671 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62730 ||||| | ||| ||| |||||||| | || |||| || || || || || |||| Sbjct 4251 ATGCTTGCTCGCTTTCATATGGATAACGCATCAGTATAAGTGCATCTGCAAAACCCTGAA 4310 Query 62731 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62790 | ||||| || || |||| ||| ||| ||||||| | | ||||| |||| |||||||| Sbjct 4311 CTCCAATTCCTATGGGTCGATGCCTCATATTAGATTTCTTGGCTTCAGGAAGAGGATAAT 4370 Query 62791 AATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTT 62850 |||| |||||||| |||||||| | |||| | || ||| || || || || | Sbjct 4371 AATTTATATCTATGATTTTATTCAAATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCT 4430 Query 62851 TGAGAAAATCAAATCGCCCATCTATTACA----AACATGTTCAAGGCAACAGATGCCAGA 62906 | |||||||| | | || || | | |||||||| | |||| |||||| ||| Sbjct 4431 TTTGAAAATCATAAGACTTAT-TAGCAGAAATGAACATGTTAAGAGCAATAGATGCTAGA 4489 Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966 || |||||||||| ||||| | | | ||||| | || ||||| || | ||| || Sbjct 4490 TTGCAAACGGCTATCTCATCTGGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTG 4549 Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026 || ||||| || || | ||||| ||||||||| ||| ||||||| | ||||||||| | Sbjct 4550 CATTTGATGGTACCAATATTTTTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAAC 4609 Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGC 63085 || | || || || ||||| | || | ||| || || || ||| | |||| |||| Sbjct 4610 ATATACGGTGTTCCTGTTTCTACTTGGGCTTCAATGATAGCAAACCAAAGTGACT-GAGC 4668 Query 63086 CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63145 || ||| | ||| | | | |||| |||| ||| | ||| || ||| || || Sbjct 4669 TTTAATTTTCCTATTGAAACGGCCTTCTTTTTCATATTTTTCATATAACTCTTCAAATTC 4728 Query 63146 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63205 ||||||||||| | || | || ||||||| | |||||||| | ||||| || || Sbjct 4729 TTCTCCCCAAACTTCATCAAGCCCTGGACATTTGTGGGGACACATAAGTGACCAGTCGCC 4788 Query 63206 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63265 ||| | || ||| |||| || |||||||||||||| || || ||||| ||||| Sbjct 4789 ATCAGATTCTACGCGTCTCATGAACAGATCAGGAATCCAGAGGGCGTAAAATAAGTCTCT 4848 Query 63266 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63325 | ||| |||||||| ||||||||||| ||||| | || | ||| | | |||||| || Sbjct 4849 TGCTCTGTGTTCCTCTTTTCCTGTATTTTTTTTTAAGTCTAAAAACTCGAAAATATCCGA 4908 Query 63326 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63385 |||||| || || |||||||| || | | ||||||| ||| || ||||| |||| Sbjct 4909 ATGCCAAGGCTCTAAGTATATAGCAAACGCACCAGGCCTTTTTCCGCCACCCTGGTCTAC 4968 Query 63386 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63445 || | || ||||| | || || ||||| || | | || || ||| | ||||| Sbjct 4969 ATAACGTGCTACATTATTGAACACCCTTAACATAGGCACTAAGCCATTAGATGTGCCATT 5028 Query 63446 GGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63505 || ||| | || | |||| | || |||||| | || || || ||||| || Sbjct 5029 AGTGCCGCATATTGATGTTCCTTTAGCTCGAATACAATGAACATTTATTCCAATTCCTCC 5088 Query 63506 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATC 63565 || |||||| || | ||| || ||| | | | | | || || || || ||| Sbjct 5089 CGCTGATTTAGAAATCATTGCACACTGTTCAACTGATTTAAAAATTCCTTCAATTGAATC 5148 Query 63566 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63625 | | ||| |||| | |||||| || | || | || || ||| | || ||| Sbjct 5149 TGCTACCATTGTAAGCAAAAAACAAGATGATAACTGAGGGCGTCTTGTTGCAGCCGCAAA 5208 Query 63626 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63685 ||| || ||||| || || ||||| |||| ||||| || | |||||| || ||||| || Sbjct 5209 TAAAGTTGGAGAGGCATGGGTAAAATATTTCTCAGAGAGCAAATTGTATGTTTCAATTGC 5268 Query 63686 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63745 | || ||||| ||| ||||| | | || | ||| ||||||||||| ||||| Sbjct 5269 AGCATCGATATCTTCACCATGTATTCCAATCGATACTCTCATCAACATGTGCTGTGGTCT 5328 Query 63746 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63805 || || | || || | ||| | ||| || || ||| | ||| ||||| ||||| Sbjct 5329 CTCCACAACTTTACCTTTAACTTTAAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAA 5388 Query 63806 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 || |||||| |||||| || || || || || |||| || Sbjct 5389 GTAATTGTATCCAAAGTCGCGGTCATATATGATTGCCGAATT 5430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622468823271440