Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq37138 138 1e-27 seq10185 84.2 2e-11 >seq37138 Length=11844 Score = 138 bits (152), Expect = 1e-27 Identities = 618/967 (64%), Gaps = 19/967 (2%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 ||||| || || || || || || | || ||||| | || | ||||| || | Sbjct 3908 TGATTAACAACTTGGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAA 3967 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 |||||||| || || ||||| || || |||||||| || | ||| || |||||| || Sbjct 3968 GGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCA 4027 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCT-TCCTTTAGCGTACCCCAATC 145233 || | ||| ||||| || | ||| | ||| |||| ||| ||||||| | | |||||| Sbjct 4028 ACAAGTAAAGAATTTCGTATGCCATACTT-TTGAATTCTCTCCTTTAAAGCATTCCAATC 4086 Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 ||| | || ||| | || | |||||||||||| || || ||||| | ||| | || Sbjct 4087 CCACAAGTTTGTTGGCGTAACATTCCACATGTCGTATTGTAATATGCCTTTGCTTACAGG 4146 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAG 145353 || |||| | | || ||| || | || || | || || || ||||| | Sbjct 4147 ACTCCCTTCATATGATTCATAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAA 4206 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 || || | || ||||| || ||||| | || |||| |||| ||||| || Sbjct 4207 TGCTCCATAGTAGATTGTTTCAAATATTTGTATATTTAGCAAATATGCTTGCTCGCTTTC 4266 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 || || |||| ||||| || ||||| || | ||||| | ||| | || ||||| Sbjct 4267 ATATGGATAACGCATCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGG 4326 Query 145474 CCGATGTTTCATGTT-GCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATA 145531 ||||| |||| || | | | || | | | | | |||||| ||| || || Sbjct 4327 TCGATGCCTCATATTAGAT--TTCTTGGCTTCAGGAAGAGGATAATAATTTATATCTATG 4384 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 ||||||||||| ||| || || || | | | ||||| ||| ||| | Sbjct 4385 ATTTTATTCAAATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCTTTTGAAAATCATA- 4443 Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651 || || | | | | | | || | || || || || | ||| ||||| || Sbjct 4444 --AGACTTATTAGCAGAAATGAACATGTTAAGAGCAATAGATGCTAGATTGCAAACGGCT 4501 Query 145652 GTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709 |||| || | ||||| |||| || || || | ||||||||||| |||||||||| Sbjct 4502 ATCTCATC--TGGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGG 4559 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 | || | ||||| ||||||||||| ||||| || | ||||| || | ||| |||||| Sbjct 4560 TACCAATATTTTTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTG 4619 Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGT-CCTGCGCACGCACCT 145826 || || || || || | || | |||| |||| |||| ||| || | | Sbjct 4620 TTCCTGTTTCTACTTGGGCTTCAATGATAGCAAAC---CAAAGTGACTGAGCTTTAATTT 4676 Query 145827 GCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 | | | | ||||| |||| ||| ||||| || | ||| ||||| | || Sbjct 4677 TCCTATTGAAACGGCCTTCTTTTTCATATTTTTCATATAACTCTTCAAATTCTTCTCCCC 4736 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 | || || || ||||| |||| ||||||||| || ||||| |||| | | | Sbjct 4737 AAACTTCATCAAGCCCTGGACATTTGTGGGGACACATAAGTGACCAGTCGCCATCAGATT 4796 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006 ||||| ||| |||| ||| || | ||| || ||||| | ||||| | ||| || Sbjct 4797 CTACGCGTCTCATGAACAGATCAGGAATCCAGAGGGCGTAAAATAAGTCTCTTGCTCTGT 4856 Query 146007 AATCCTC 146013 ||||| Sbjct 4857 GTTCCTC 4863 >seq10185 Length=35228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || || || ||||| | ||| | || ||||| || || || || || || | | Sbjct 2539 CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGAT 2598 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| |||| || || | ||||| || || | || ||||| ||||| || || || Sbjct 2599 AATG-TGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 2657 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || |||||||| || ||| ||| |||| | | ||| | |||||| | | || | Sbjct 2658 AATACCTTCTTTATCT-TGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTA 2716 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 2717 CCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471650329570560