Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8032 123 2e-23 seq61169 107 1e-18 seq10185 107 1e-18 seq36707 104 2e-17 seq4449 104 2e-17 >seq8032 Length=2190 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||||||| ||||| || || || || ||| || | || ||||| ||| |||||||| Sbjct 1546 AACGAGCGTTTCATTGTAAATGGCTCCCATGACGCATGTAAACTGCAAGACCTACTTGAC 1487 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 |||||||| |||||||| || |||||| |||||||| || || ||||| || | | Sbjct 1486 GGCTTTATACGCAAGTTCGTATTGTGTCCCGAATGCGACAATCCCGAGACTGACTTGACG 1427 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| | || ||||| ||| |||||||| ||||| | |||||| | Sbjct 1426 GTTTCCGCAAAGAATCAGACAATCTCGCAGTCGTGCAAAGCATGCGGCTTCCATGGGCTG 1367 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | | || || | ||||| |||||| |||||||||| ||| Sbjct 1366 CTCAAGGTCAATCATAAGGTGAACACGTTCATATTGAAGAATCCGCCA 1319 >seq61169 Length=1943 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 1691 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1632 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 1631 GCCAATATTTAGCCTTA 1615 >seq10185 Length=35228 Score = 107 bits (118), Expect = 1e-18 Identities = 168/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 38082 CAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 |||| ||| ||||| | || || | ||||| |||||| || ||| || || ||||| Sbjct 2531 CAATAATT-CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTA 2589 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 || ||||| || ||| | || || ||||| || || ||||| || | ||||| ||| Sbjct 2590 TAGTCAGATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGA 2649 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | || | |||||||| || |||||| || ||||||| || |||||| | Sbjct 2650 TCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAA 2709 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || || || ||||||||||| || || | ||||| || || || ||||| || Sbjct 2710 GGTTCTACCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTT 2768 >seq36707 Length=7948 Score = 104 bits (114), Expect = 2e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5276 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 5335 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 5336 GGTTATATTTAG 5347 >seq4449 Length=67262 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||||||||||||| | ||| || ||||| |||||||| ||||| Sbjct 64507 CCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAG 64448 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || |||||||| | || |||||||| | || Sbjct 64447 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGA 64388 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || || ||||| | || |||||| ||||| Sbjct 64387 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACC 64328 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || ||||| ||||| | ||| || ||||| ||||||||||| Sbjct 64327 TCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTT 64278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334696416029654