Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4449 118 9e-22 seq32255 116 3e-21 >seq4449 Length=67262 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| ||||||| | || || ||| | ||| Sbjct 64281 ATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCT 64340 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| |||||||| || ||||| || || Sbjct 64341 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAGGGAATTCCTCCAGA 64396 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| |||||||| | ||||||| ||||| | || || Sbjct 64397 TCAACAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTA 64456 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||| ||||||||||| || | ||||| ||| Sbjct 64457 CAATATCCAAAAAGAATCTACTTTGCATTTGGTG 64490 >seq32255 Length=22131 Score = 116 bits (128), Expect = 3e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 51060 GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATC 51119 ||| ||||| |||| ||| ||||||||||| || ||||| | |||||||| ||||| Sbjct 3724 GTCATGCACTCCGCCAATGGACCACATACAGCCAACATAGCCACTTGGATCGCGTCCATC 3665 Query 51120 CACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGC-G 51178 | ||| || | || || | || ||||| || ||| |||| ||| | | | | Sbjct 3664 TAAGCTATATTTGTCATTCAACAAAATGGCGTACTCCAGTGCC-TGTTCCGGCGATTCTG 3606 Query 51179 TCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGC 51238 ||||||| | ||| ||||| ||||| |||||||||| | |||||||| |||||||||| Sbjct 3605 TCCATTCGAGAATCTTCTTCGCCCAATACATGCGCAAAAACCCGTGCATTTTGCCCTCGC 3546 Query 51239 -AACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 || || |||| ||| || || ||||| || ||||||| Sbjct 3545 GCACCAA-CTGCAATTGTGCGGAATTCCATAAATCGTCGT 3507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433003555680710