Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq10185 102 7e-17 seq56942 93.3 4e-14 seq4449 84.2 2e-11 >seq10185 Length=35228 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| ||||| ||||| | ||||| ||||| |||||| |||| ||||| Sbjct 2768 AAAATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCT 2709 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| || | | | |||||| |||||| || |||||||| |||| ||| Sbjct 2708 TCGGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 2649 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATT 111361 || ||| | | |||| ||| || || |||||||||||| | | | ||| | || | Sbjct 2648 CAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTAT--CTGACT 2591 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||||| || ||||| || ||||| ||| | ||| | || | || ||||| Sbjct 2590 ATAATATCCAGAAAGAGTCAACACTTCATCTGGTGCTCCGCTTACGTGGTGG 2539 >seq56942 Length=2534 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 || |||||||||||| ||||| |||||| |||| || || || ||||| ||||| || Sbjct 47 TTGAAAAATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGA 106 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 ||| || | ||| | || ||| |||||| || ||||| || | || Sbjct 107 ACCATCGGACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCC 166 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 ||||| ||| | || || | || |||||||| | |||||| || || |||| Sbjct 167 AGATCAGCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGA 226 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| ||||| || || || || || ||||||||||| || || Sbjct 227 CTACAACATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGG 280 >seq4449 Length=67262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| || || || || || | || ||||||||||| || | || || ||| Sbjct 64278 AACATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 64337 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| || | | | || ||| || ||| |||||||| || |||| ||| Sbjct 64338 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 64397 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| | | || | ||| |||||||| |||||||| || | | || || Sbjct 64398 CAACAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTAC 64457 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 ||||| |||||||||||||| | ||||| ||||||||||| || |||||| Sbjct 64458 AATATCCAAAAAGAATCTACTTTGCATTTGGTGTTGCGTCTACGTGGTGGC 64508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422723258582800