Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28]
61,434 sequences; 410,872,512 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq37138 224 8e-54
seq4449 159 3e-34
seq56942 152 4e-32
seq10185 109 5e-19
>seq37138
Length=11844
Score = 224 bits (248), Expect = 8e-54
Identities = 714/1091 (65%), Gaps = 21/1091 (2%)
Strand=Plus/Plus
Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838
|| || || ||||| | || || | || || || || ||||||||||| ||||| ||
Sbjct 3563 TTATCAACAGTAAACTGTATTGCATTAGCGGCTGGTTTTGTGCGCAAATAATACATTCCA 3622
Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898
||||| | || |||||||| || | ||||| | || ||| | | ||| |||||
Sbjct 3623 GTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGATGTTAACTTTCCATAGTTGGGT 3682
Query 128899 TGACTCaaaaa--aaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956
| || || ||| ||||| || ||||||||||||||||| | || | ||| || |
Sbjct 3683 T--CTGCAACGTGAATGTTAAAAGACTGACTTTGATCAATAAAAGCTCCTCTATCAGCTG 3740
Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGT 129016
|||| ||| ||| ||| |||||||| || || ||||| | || | | |
Sbjct 3741 CCATTTTAATTGTCGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCACGAATGG 3800
Query 129017 GTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCA 129076
|| || || ||| || || || | || | ||| ||||||| ||| ||
Sbjct 3801 ACTTAGGAATAGTTTCTATATTTTGTATAGAACCACGGCTTGATATAATTTGATTTTTCA 3860
Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA-CT 129135
| | || | | || | |||| | | | ||| || | ||| || ||| | ||
Sbjct 3861 TGTTGTCATCCCATAATTCAAGTTCGGTTAGATC-TCTGAGAAGGTGATGATTAACAACT 3919
Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195
|| || ||||| | ||||| |||| ||| || || || | || ||||| |||
Sbjct 3920 TGGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAAGGTTCAAAGGAT 3979
Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCG 129253
||||| || || | |||||||| |||| || || |||||| ||| || | ||||
Sbjct 3980 TCATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCAACAAGTAAAG-- 4037
Query 129254 AGTTTCGCAAACCGTGCTGTTTAATG-TCtttttttAATTGTGTCCAGTCCCACATCGAT 129312
| ||||| | || | || || ||| ||| ||| || | |||| ||||||| |
Sbjct 4038 AATTTCGTATGCCATACTTTTGAATTCTCTCCTTTAAAGCAT-TCCAATCCCACAAGTTT 4096
Query 129313 GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAG 129372
|| || || |||||||| ||||||||| ||||| || || | |||||
Sbjct 4097 GTTGGCGTAACATTCCACATGTCGTATTGTAATATGCCTTTGCTTACAGGACTCCCTTCA 4156
Query 129373 TAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAA 129432
|| || || | ||| | ||| || ||||| || || || || ||||| ||| |
Sbjct 4157 TATGATTCATAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAATGCTCCATAG 4216
Query 129433 TAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA 129492
|| |||||||| |||| | || | || | || || |||||||| || || |
Sbjct 4217 TAGATTGTTTCAAATATTTGTATATTTAGCAAATATGCTTGCTCGCTTTCATATGGATAA 4276
Query 129493 CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTT 129552
|||| || || || || || ||||| |||| || | || ||||||||||| |
Sbjct 4277 CGCATCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGGTCGATGCCTC 4336
Query 129553 CTATTGGATTTTTGTGCCGACAACAAG-GGATAGTAGTTGATGTCTATAATTTTGTTTAA 129611
|||| ||||| | || | || ||| ||||| || || || ||||| ||||| || ||
Sbjct 4337 ATATTAGATTTCT-TGGCTTCAGGAAGAGGATAATAATTTATATCTATGATTTTATTCAA 4395
Query 129612 ATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATC 129671
||| || ||| |||| ||||| | ||| | | ||| ||||| || | || |
Sbjct 4396 ATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCTTTTGAAAATCATAA--GACTTATTA 4453
Query 129672 GATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTT 129731
| | || || || | | ||| || || | |||||| ||||| | || | |
Sbjct 4454 GCAGAAATGAACATG-TTAAGAGCAATAGATGCTAGATTGCAAACGGCTATCTCATCT-- 4510
Query 129732 GTCACTG--TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGC 129789
| | ||| || ||||||||||| | |||||||| || ||| ||||| || | ||
Sbjct 4511 GGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGGTACCAATATTT 4570
Query 129790 TTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCG 129849
|||||||||||||| |||| |||| ||| || |||| ||| ||||| || || |||||
Sbjct 4571 TTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTGTTCCTGTTTCT 4630
Query 129850 ACTTGCGTTTC 129860
||||| | |||
Sbjct 4631 ACTTGGGCTTC 4641
>seq4449
Length=67262
Score = 159 bits (176), Expect = 3e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || || ||||| || |||| || ||||| |||||||||| || || ||
Sbjct 64278 AACATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 64337
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || ||||| || ||||| ||||| ||||| ||||| || |||
Sbjct 64338 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 64397
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
||||| ||| | |||||||| ||||||||| | || ||| ||||||| |||| || |||
Sbjct 64398 CAACAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTAC 64457
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|| || ||||||||||| || | ||||| || |||||
Sbjct 64458 AATATCCAAAAAGAATCTACTTTGCATTTGGTGTTGCG 64495
>seq56942
Length=2534
Score = 152 bits (168), Expect = 4e-32
Identities = 173/232 (75%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| |||||||| ||||| ||||| | || ||||| ||| | || || ||||| ||| |
Sbjct 50 AAAAATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAACC 109
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| || || | || || ||||| ||||||||||| || |||||||| || || ||
Sbjct 110 ATCGGACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCAGA 169
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
||| |||||||| || || || ||||||||| | || ||| ||||| | ||||| ||
Sbjct 170 TCAGCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGACTA 229
Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||| ||||| ||||| || | || || |||||||| |||| || |||
Sbjct 230 CAACATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGGT 281
>seq10185
Length=35228
Score = 109 bits (120), Expect = 5e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| |||||||| ||||| |||||| | ||||| ||||| | || | || || ||| |
Sbjct 2768 AAAATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCT 2709
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | ||| ||||||||||| || || ||||||||||| |||
Sbjct 2708 TCGGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 2649
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| |||||| | || ||||| || || || || || ||| ||||| | || || ||
Sbjct 2648 CAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGACTAT 2589
Query 22396 AACATTCAAAAAGAATCCAC 22415
|| || || ||||| || ||
Sbjct 2588 AATATCCAGAAAGAGTCAAC 2569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419413738366210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |