Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq37138 224 8e-54 seq4449 159 3e-34 seq56942 152 4e-32 seq10185 109 5e-19 >seq37138 Length=11844 Score = 224 bits (248), Expect = 8e-54 Identities = 714/1091 (65%), Gaps = 21/1091 (2%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||| | || || | || || || || ||||||||||| ||||| || Sbjct 3563 TTATCAACAGTAAACTGTATTGCATTAGCGGCTGGTTTTGTGCGCAAATAATACATTCCA 3622 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | || |||||||| || | ||||| | || ||| | | ||| ||||| Sbjct 3623 GTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGATGTTAACTTTCCATAGTTGGGT 3682 Query 128899 TGACTCaaaaa--aaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 | || || ||| ||||| || ||||||||||||||||| | || | ||| || | Sbjct 3683 T--CTGCAACGTGAATGTTAAAAGACTGACTTTGATCAATAAAAGCTCCTCTATCAGCTG 3740 Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGT 129016 |||| ||| ||| ||| |||||||| || || ||||| | || | | | Sbjct 3741 CCATTTTAATTGTCGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCACGAATGG 3800 Query 129017 GTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCA 129076 || || || ||| || || || | || | ||| ||||||| ||| || Sbjct 3801 ACTTAGGAATAGTTTCTATATTTTGTATAGAACCACGGCTTGATATAATTTGATTTTTCA 3860 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA-CT 129135 | | || | | || | |||| | | | ||| || | ||| || ||| | || Sbjct 3861 TGTTGTCATCCCATAATTCAAGTTCGGTTAGATC-TCTGAGAAGGTGATGATTAACAACT 3919 Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195 || || ||||| | ||||| |||| ||| || || || | || ||||| ||| Sbjct 3920 TGGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAAGGTTCAAAGGAT 3979 Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCG 129253 ||||| || || | |||||||| |||| || || |||||| ||| || | |||| Sbjct 3980 TCATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCAACAAGTAAAG-- 4037 Query 129254 AGTTTCGCAAACCGTGCTGTTTAATG-TCtttttttAATTGTGTCCAGTCCCACATCGAT 129312 | ||||| | || | || || ||| ||| ||| || | |||| ||||||| | Sbjct 4038 AATTTCGTATGCCATACTTTTGAATTCTCTCCTTTAAAGCAT-TCCAATCCCACAAGTTT 4096 Query 129313 GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAG 129372 || || || |||||||| ||||||||| ||||| || || | ||||| Sbjct 4097 GTTGGCGTAACATTCCACATGTCGTATTGTAATATGCCTTTGCTTACAGGACTCCCTTCA 4156 Query 129373 TAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAA 129432 || || || | ||| | ||| || ||||| || || || || ||||| ||| | Sbjct 4157 TATGATTCATAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAATGCTCCATAG 4216 Query 129433 TAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA 129492 || |||||||| |||| | || | || | || || |||||||| || || | Sbjct 4217 TAGATTGTTTCAAATATTTGTATATTTAGCAAATATGCTTGCTCGCTTTCATATGGATAA 4276 Query 129493 CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTT 129552 |||| || || || || || ||||| |||| || | || ||||||||||| | Sbjct 4277 CGCATCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGGTCGATGCCTC 4336 Query 129553 CTATTGGATTTTTGTGCCGACAACAAG-GGATAGTAGTTGATGTCTATAATTTTGTTTAA 129611 |||| ||||| | || | || ||| ||||| || || || ||||| ||||| || || Sbjct 4337 ATATTAGATTTCT-TGGCTTCAGGAAGAGGATAATAATTTATATCTATGATTTTATTCAA 4395 Query 129612 ATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATC 129671 ||| || ||| |||| ||||| | ||| | | ||| ||||| || | || | Sbjct 4396 ATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCTTTTGAAAATCATAA--GACTTATTA 4453 Query 129672 GATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTT 129731 | | || || || | | ||| || || | |||||| ||||| | || | | Sbjct 4454 GCAGAAATGAACATG-TTAAGAGCAATAGATGCTAGATTGCAAACGGCTATCTCATCT-- 4510 Query 129732 GTCACTG--TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGC 129789 | | ||| || ||||||||||| | |||||||| || ||| ||||| || | || Sbjct 4511 GGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGGTACCAATATTT 4570 Query 129790 TTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCG 129849 |||||||||||||| |||| |||| ||| || |||| ||| ||||| || || ||||| Sbjct 4571 TTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTGTTCCTGTTTCT 4630 Query 129850 ACTTGCGTTTC 129860 ||||| | ||| Sbjct 4631 ACTTGGGCTTC 4641 >seq4449 Length=67262 Score = 159 bits (176), Expect = 3e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || ||||| || |||| || ||||| |||||||||| || || || Sbjct 64278 AACATGCAGATCTTCGTTAAGACCCTAACGGGCAAAACCATCACTCTTGAGGTTGAGCCC 64337 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || ||||| || ||||| ||||| ||||| ||||| || ||| Sbjct 64338 TCTGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 64397 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||| | |||||||| ||||||||| | || ||| ||||||| |||| || ||| Sbjct 64398 CAACAGCGTTTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTAC 64457 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||||||||| || | ||||| || ||||| Sbjct 64458 AATATCCAAAAAGAATCTACTTTGCATTTGGTGTTGCG 64495 >seq56942 Length=2534 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| ||||| ||||| | || ||||| ||| | || || ||||| ||| | Sbjct 50 AAAAATGCAAATCTTTGTGAAAACGCTGACTGGTAAGACGATTACGCTGGAAGTTGAACC 109 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || ||||| ||||||||||| || |||||||| || || || Sbjct 110 ATCGGACACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAGGGTATACCGCCAGA 169 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| |||||||| || || || ||||||||| | || ||| ||||| | ||||| || Sbjct 170 TCAGCAACGTCTGATCTTCGCTGGCAAACAGCTCGAAGATGGACGCACATTGTCCGACTA 229 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| ||||| || | || || |||||||| |||| || ||| Sbjct 230 CAACATACAAAAGGAATCGACGCTTCACTTGGTTTTGCGTCTGCGTGGCGGT 281 >seq10185 Length=35228 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| |||||| | ||||| ||||| | || | || || ||| | Sbjct 2768 AAAATGCAAATCTTTGTAAAAACTCTTACCGGGAAAACTATTACCTTGGAGGTAGAACCT 2709 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | ||| ||||||||||| || || ||||||||||| ||| Sbjct 2708 TCGGATACTATCGAGAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 2649 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || |||||| | || ||||| || || || || || ||| ||||| | || || || Sbjct 2648 CAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGACGCACATTATCTGACTAT 2589 Query 22396 AACATTCAAAAAGAATCCAC 22415 || || || ||||| || || Sbjct 2588 AATATCCAGAAAGAGTCAAC 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419413738366210