Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4449 143 5e-29 seq34347 120 6e-22 >seq4449 Length=67262 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || | || || ||||||||||| || || || ||| Sbjct 64507 CCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAG 64448 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || ||||| | | ||||| || || ||| Sbjct 64447 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGA 64388 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||| || ||||| ||||| || || | | || || Sbjct 64387 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACC 64328 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 64327 TCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCAT 64281 >seq34347 Length=4815 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| |||||||| |||||||| || |||| ||| | ||||||| || |||| Sbjct 1789 CCGCCGCGCAGGCGCAACACCAAGTGGAGTGTGGTCTCGGCTGGGATGTTGTAGTCGGCC 1730 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||| ||||| || || | | ||||||||||| ||| Sbjct 1729 AAGGTGCGGCCATCCTCCATTTGCCGGCCGGCAAAAATCAAACGTTGTTGGTCGGTTGGT 1670 Query 68355 ATGCCTTCCTTGT-CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||||| | ||| |||||||||| | |||||| || || | || || || Sbjct 1669 ATGTATTCCTTGCACATGA-TCTTTGCCTTAATCACCTCGACCGTATCCGATGGCTCAAC 1611 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| | ||||| ||||| |||||||| ||||| Sbjct 1610 ATCCAGGGTGATGGTGCGATCGGTGAGAGTCTTAACGAATATTTGCAT 1563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920914663118480