Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq32255 111 1e-19 seq56942 87.8 1e-12 >seq32255 Length=22131 Score = 111 bits (122), Expect = 1e-19 Identities = 189/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 37839 TTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGC 37898 || ||||| | || ||| | ||| | ||||||||||| || ||||| || | ||||| Sbjct 3515 TTATGGAATTCCGCACAATTGCAGTTGGTGCGCGAGGGCAAAATGCACGGGTTTTTGCGC 3574 Query 37899 ATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACT 37956 ||||||||| ||||| ||| | |||||| | || || | || | || || | | Sbjct 3575 ATGTATTGGGCGAAGAAGATTCTCGAATGGACAGA--ATCGCCGGAACAGGCACTGGAGT 3632 Query 37957 ACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCG 38016 ||||||||| | ||||| || || ||||| || || || ||||| | || || || | Sbjct 3633 ACGCCATTTTGTTGAATGACAAATATAGCTTAGATGGACGCGATCCAAGTGGCTATGTTG 3692 Query 38017 GCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACG 38076 ||||| ||||||| || |||| | || || | |||| ||| | |||| | || Sbjct 3693 GCTGTATGTGGTCCATTGGCGGAGTGCATGACCAGGGCTGGGCTGAGCGTGCCATCTTCG 3752 Query 38077 GCAAGATTCGGTACATGAACTACAACGGATGT 38108 | ||||| || | |||||| || | |||||| Sbjct 3753 GTAAGATACGTTTCATGAATTATCAGGGATGT 3784 >seq56942 Length=2534 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/244 (69%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 33891 GCAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTT 33950 |||||| ||| || | ||| |||| |||| |||||||| ||||| || ||||| Sbjct 287 GCAATC---ACCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTT 231 Query 33951 GTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 ||| || | |||| || | || || | || ||||| || || ||||| || ||||| Sbjct 230 GTAGTCGGACAATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTG 171 Query 34011 ATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TC 34067 ||| ||| | | |||||| || |||||| |||| || | || || | || Sbjct 170 ATCTGGCGGTATACCCTCTTTATCTTGAATTTTC-GCTT--TGACATTCTCAATCGTGTC 114 Query 34068 AGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | | ||| ||| | ||| || || || || || || |||||||||||||||||||| Sbjct 113 CGATGGTTCAACTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 Query 34128 TTTT 34131 |||| Sbjct 53 TTTT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396765108710068