Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10185 140 8e-28 seq4449 134 3e-26 seq56942 127 5e-24 seq4760 89.7 1e-12 >seq10185 Length=35228 Score = 140 bits (154), Expect = 8e-28 Identities = 184/254 (72%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 288230 TGATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTT 288289 ||||| |||| || |||||| || | | || || ||||||| || ||||| | Sbjct 2523 TGATGGTTCAATAAT-TCCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCT 2581 Query 288290 GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC 288349 ||||||||||||| | | |||||||| ||||| ||||| || || || || |||| || Sbjct 2582 GGATATTATAGTCAGATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAAC 2641 Query 288350 GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAG 288409 | || ||| ||| || ||||||||||| || ||||| ||||| || || || |||| Sbjct 2642 GTTGCTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAG 2701 Query 288410 AATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCT 288469 ||| | |||||| || | || || || |||||||| ||||| || || || || | Sbjct 2702 TATCCGAAGGTTCTACCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTT 2761 Query 288470 GCATTATGTTATTC 288483 ||||| |||| ||| Sbjct 2762 GCATTTTGTTTTTC 2775 >seq4449 Length=67262 Score = 134 bits (148), Expect = 3e-26 Identities = 151/201 (75%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| ||||| | ||| ||||| || ||||| | ||||| || || || Sbjct 64472 TTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAA 64413 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||||||||| |||| || ||||| ||||| ||||| || || ||||| || Sbjct 64412 TATCAAACGCTGTTG---ATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTGAC 64356 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| ||| | || || || || ||||| || || || || || ||||| Sbjct 64355 ATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTT 64296 Query 288459 GACGAATATCTGCATTATGTT 288479 ||||| |||||||| |||| Sbjct 64295 AACGAAGATCTGCATGTTGTT 64275 >seq56942 Length=2534 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || || ||||||| | |||||||| ||||| | ||| Sbjct 256 TGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGACAATGTGCGTCCATCTTCGAGCTGT 197 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || |||||||||||||| || ||| ||||| || || |||||||| || ||| Sbjct 196 TTGCCAGCGAAGATCAGACGTTGCTGA---TCTGGCGGTATACCCTCTTTATCTTGAATT 140 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 |||||||| || || || || | || | ||| ||||| ||||| |||||||| || Sbjct 139 TTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAACTTCCAGCGTAATCGTCTTACCA 80 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || || || |||||| Sbjct 79 GTCAGCGTTTTCACAAAGATTTGCATT 53 >seq4760 Length=7449 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| || ||||| | |||||| ||||| || | ||||||| | | Sbjct 2066 AGCACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTCCATTT 2007 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || ||||| || || || || |||| ||| ||||| ||| || ||||||||||| Sbjct 2006 TCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCT 1947 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 | ||||| ||||| | ||||| ||| ||| | ||||| || | | || || Sbjct 1946 TAAATTTTAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGTT 1887 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 ||| || | ||||| || || || || |||||| || | ||| Sbjct 1886 TTCTCGTTAAGAGTTTTTACAAAGATTTGCATTTTGCTGTTC 1845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178725866742252