Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq37138 174 2e-38 seq4449 109 5e-19 seq56942 105 7e-18 seq10185 104 2e-17 >seq37138 Length=11844 Score = 174 bits (192), Expect = 2e-38 Identities = 1109/1777 (62%), Gaps = 38/1777 (2%) Strand=Plus/Plus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 ||| || || ||||| ||||||| ||||| ||||| || |||||||||||||| || Sbjct 3562 TTTATCAACAGTAAACTGTATTGCATTAGCGGCTGGTTTTGTGCGCAAATAATACATTCC 3621 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 ||||| | ||| |||||||| || | || | ||||| | | |||| Sbjct 3622 AGTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGATGTTAACTTTCCATAGTTGGG 3681 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 | || | | |||||| ||||| || ||||| || ||||| || | ||| || || Sbjct 3682 TTCTGCAACGTGAATGTTAAAAGACTGACTTTGATCAATAAAAGCTCCTCTATCAGCTGC 3741 Query 153851 CATGTCAATCAA-GTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGT 153909 ||| | ||| | ||| |||| |||||||| || || ||||| | | | |||| Sbjct 3742 CATTTTAATTGTCGATTTAACTGAA-ATTTCCCAAACTGTCTTGTATAAGTCACGAATGG 3800 Query 153910 CGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCA 153969 | || || || || || || | | || | | | |||||| ||| || Sbjct 3801 ACTTAGGAATAGTTTCTATATTTTGTATAGAACCACGGCTTGATATAATTTGATTTTTCA 3860 Query 153970 TGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTT 154029 ||| ||| || | || | ||| || |||| | | ||| || |||| |||| Sbjct 3861 TGTTGTCATCCCATAATTCAAGTTCGGTTAGATCTCTGAGAAGGTGATGATTAACAACTT 3920 Query 154030 GAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATT 154089 | || || || | || || || | || | ||| || | || || || |||| Sbjct 3921 GGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAAGGTTCAAAGGATT 3980 Query 154090 CGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGT 154149 | || || || | ||||||||||| | |||||| ||||| || || | ||||| | Sbjct 3981 CATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCAACAAGTAAAGAAT 4040 Query 154150 TTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAG 154209 |||| | || | ||| ||| | | |||||| | ||||| ||||||||| || | Sbjct 4041 TTCGTATGCCATACTTTTGAATTCTCTCCTTTAAAGCATTCCAATCCCACAAGTTTGTTG 4100 Query 154210 GTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTG---TCACTAT 154266 | || ||||||||||||||||| || | || || | ||||| ||| ||| Sbjct 4101 GCGTAACATTCCACATGTCGTATTGTAATATGCCTTTGCTTACAGGACTCCCTTCA-TAT 4159 Query 154267 AACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGT 154326 | | || || ||| || || || || || || || || ||||| || |||||| Sbjct 4160 GATTCA--TAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAATGCTCCATAGT 4217 Query 154327 ATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATC 154386 | | ||||| |||||| | |||| || | |||| || ||||| || || | | Sbjct 4218 AGATTGTTTCAAATATTTGTATATTTAGCAAATATGCTTGCTCGCTTTCATATGGATAAC 4277 Query 154387 CCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTA 154446 || | || ||||| || | || |||| || | ||| | ||||| || | | Sbjct 4278 GCATCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGGTCGATGCCTCA 4337 Query 154447 AATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANnn 154506 ||| |||| ||||| | |||||||||||||| ||||| || |||||||| | Sbjct 4338 TATTAGATTTCTTGGCTTCAGGAAGAGGATAATAATTTATATCTATGATTTTATTCAAAT 4397 Query 154507 nnnnnnNNNNNNNNNNNNNNNNNNNNNNNNATGCGAC--AAAATCA-AACACTCCGCTTT 154563 | || ||||||| || ||| | | Sbjct 4398 TTTTTGTAACAGTTTTAGTTACTTCTTT--AAGCTTTTGAAAATCATAAGACT----TAT 4451 Query 154564 TAATA-AAACGA-----TTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAG 154617 || | ||| || || | | | ||| || | ||||||||||| || || || | Sbjct 4452 TAGCAGAAATGAACATGTTAAGAGCAATAGATGCTAGATTGCAAACGGCTATCTCATCTG 4511 Query 154618 AACTACTG--TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTT 154675 ||| |||| |||||||| | |||||||| |||||| ||||| || | || Sbjct 4512 GCG--CTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGGTACCAATATT 4569 Query 154676 TTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||| ||||| ||| |||| || | || || ||||| || ||||| || || ||||| Sbjct 4570 TTTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTGTTCCTGTTTC 4629 Query 154736 CACTTGGGTTTCAATAATTGTG--CGAAACAGACTTCGCGCCTCAACTTGACAAGTAAAT 154793 ||||||| |||||| || | | ||| |||| | || | || || | | | || Sbjct 4630 TACTTGGGCTTCAATGATAGCAAACCAAAGTGACT--GAGCTTTAATTTTCCTATTGAAA 4687 Query 154794 CGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGAC 154853 || ||| | ||||||| ||| || | | |||||| ||| | | || || Sbjct 4688 CGGCCTTCTTTTTCATATTTTTCATATAACTCTTCAAATTCTTCTCCCCAAACTTCATCA 4747 Query 154854 AAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTC 154913 | || ||||| || ||||||||| | |||||| | | || ||||||| || Sbjct 4748 AGCCCTGGACATTTGTGGGGACACATAAGTGACCAGTCGCCATCAGATTCTACGCGTCTC 4807 Query 154914 ATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCG 154973 || |||| ||| || | ||| | ||||| || || || | || | | || || Sbjct 4808 ATGAACAGATCAGGAATCCAGAGGGCGTAAAATAAGTCTCTTGCTCTGTGTTCCTCTTTT 4867 Query 154974 CCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATAT 155033 || | ||| ||||| | ||||| || | || || | ||||| |||||||| ||| Sbjct 4868 CCTGTATTTTTTTTTAAGTCTAAAAACTCGAAAATATCCGAATGCCAAGGCTCTAAGTAT 4927 Query 155034 ACGGCCATCGCGCCTTTGCGTTTTCCTCCT---TGATCCACGTGACGCACACAATTATTG 155090 | || | ||| || | |||||| || || || || | ||| | ||||||| Sbjct 4928 ATAGCAAACGCACCAGGCCTTTTTCCGCCACCCTGGTCTACATAACGTGCTACATTATTG 4987 Query 155091 TACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTG 155150 |||| | |||| || | | ||| | | ||||| || ||||| | ||| | | Sbjct 4988 AACACCCTTAACATAGGCACTAAGCCATTAGATGTGCCATTAGTGCCGCATATTGATGTT 5047 Query 155151 CCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATAT--TT 155208 || ||| || ||||||||| | || | ||||| | ||||||| || || Sbjct 5048 CCTTTAGCTCGAATACAATGAACATTTATTCCAATTCCTCCCGCTGATTTAGAAATCATT 5107 Query 155209 GCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACA 155268 || ||| || | | | || | ||||||| || ||| || || || | || Sbjct 5108 GCACACTGTTCAACTGATTTAA--AAATTCCTTCAATTGAATCTGCTACCATTGTAAGCA 5165 Query 155269 AGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGT 155328 | ||||| || ||||| ||||| | | ||||||||||| || ||| || | Sbjct 5166 AAAAACAAGATGATAACTGAGGGCGTCTTGTTGCAGCCGCAAATAAAGTTGGAGAGGCAT 5225 Query 155329 GTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGAC 155388 | ||||| ||| | | | || ||||| ||||| || || || || || || || Sbjct 5226 GGGTAAAATATTTCTCAGAGAGCAAATTGTATGTTTCAATTGCAGCATCGATATCTTCAC 5285 Query 155389 CGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 | ||||| || |||| || | ||||| |||||| || Sbjct 5286 CATGTATTCCAATCGATACTCTCATCAACATGTGCTG 5322 >seq4449 Length=67262 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||||||||| || ||||| || | || |||||| | ||||| Sbjct 64490 CACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTC 64431 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| ||||| ||| | || | ||||| || || ||||||||||| ||||| || || Sbjct 64430 CAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCCTG 64371 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | | || ||||| ||| || | |||||| || || || || | ||| | ||| | Sbjct 64370 -AATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTTT 64312 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| || | || || ||||| || ||||| || Sbjct 64311 TGCCCGTTAGGGTCTTAACGAAGATCTGCATGTT 64278 >seq56942 Length=2534 Score = 105 bits (116), Expect = 7e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||||||| ||||| |||||||| || | | ||||| | ||||| ||||| Sbjct 256 TGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGACAATGTGCGTCCATCTTCGAGCTGT 197 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || | || || || ||||| || || || || || ||||| ||||| ||||| Sbjct 196 TTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTTATCTTGAATTTTC 137 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| ||| | || || | || ||||| | || | ||||| || || Sbjct 136 -GCTTTGACATTCTCAATCGTGTCCGATGGTTCAACTTCCAGCGTAATCGTCTTACCAGT 78 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||||| || || ||||||||||| Sbjct 77 CAGCGTTTTCACAAAGATTTGCATTTT 51 >seq10185 Length=35228 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || || ||||| || || || || || | | ||||| | ||| Sbjct 2554 AGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCT 2613 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || ||| |||| | || ||||| || || ||||| |||||||| ||| Sbjct 2614 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCT 2673 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| ||| | ||||| | || || || | || | || Sbjct 2674 TGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGTT 2733 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||||| | ||||||||| || ||||||||||| Sbjct 2734 TTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTT 2768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499261110266960