Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq37138 129 6e-25 seq56942 116 4e-21 >seq37138 Length=11844 Score = 129 bits (142), Expect = 6e-25 Identities = 480/747 (64%), Gaps = 9/747 (1%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 || || || ||||| || || || | || || || || |||| ||| ||| || Sbjct 3908 TGATTAACAACTTGGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAA 3967 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 |||||||||||||| ||||| || || |||||||| || | ||| || |||||| || Sbjct 3968 GGTTCAAAGGATTCATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCA 4027 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 || | |||||||| || | ||| | | | |||| ||||| || || | ||||||| Sbjct 4028 ACAAGTAAAGAATTTCGTATGCCATACTTTTGAATTCTCTCCTTTAAAGCATTCCAATCC 4087 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 |||| | || || | |||||||||||||| ||||| | ||| || | ||| Sbjct 4088 CACAAGTTTGTTGGCGTAACATTCCACATGTCGTATTGTAATATGCCTTTGCTTACAGGA 4147 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || || || | | || ||| || || | ||| ||||| ||||| | Sbjct 4148 CTCCCTTCATATGATTCATAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAAT 4207 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 || |||||||| || ||||| |||||| |||| || | |||| ||||| || Sbjct 4208 GCTCCATAGTAGATTGTTTCAAATATTTGTATATTTAGCAAATATGCTTGCTCGCTTTCA 4267 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 || || |||| ||| | || || || || | |||||| | || | || |||||| Sbjct 4268 TATGGATAACGCATCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGGT 4327 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATT 153506 |||||| || || | | || | | ||||| | ||| ||| || ||| Sbjct 4328 CGATGCCTCATATTAGATTTCTTGGCTTCAGGAAGAGGATAATAATTTATATCTATGATT 4387 Query 153507 TTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTC 153566 || || | || || |||||||| | ||||| || | |||||||| | | Sbjct 4388 TTATTCAAATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCTTTTGAAAATCATAAGAC 4447 Query 153567 AT-TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGT 153625 | || | || | | ||| || | |||||||| || ||||| || ||||| | Sbjct 4448 TTATTAGCAGAAATGAA--CAT--GTTAAGAGCAATAGATGCTAGATTGCAAACGGCTAT 4503 Query 153626 CTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683 ||| || | ||||| || | || || || | || | ||||||||||| ||| Sbjct 4504 CTCATC--TGGCGCTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGGTA 4561 Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 || | ||||| ||||| ||||| | || || | || || | | ||| |||||| Sbjct 4562 CCAATATTTTTTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTGTT 4621 Query 153744 CCGGTCTCGACTTGCGTTTCGACGATA 153770 || || || ||||| | ||| | |||| Sbjct 4622 CCTGTTTCTACTTGGGCTTCAATGATA 4648 >seq56942 Length=2534 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||||||| || || | | || |||||||| |||||||||||| | Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGAC 221 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||| ||||| || | |||| ||||| || || || || ||| Sbjct 220 AATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGT 161 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| |||| | ||| | | || | ||||| | | || || Sbjct 160 ATACCCTCTTTATCT-TGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAAC 102 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| ||||||||||| ||||| ||||| || ||||| Sbjct 101 TTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495881307696480