Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq10185 125 5e-24 seq4760 116 3e-21 seq4449 105 5e-18 seq56942 104 2e-17 seq2705 87.8 1e-12 >seq10185 Length=35228 Score = 125 bits (138), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || | |||||| || || ||||| || || || || || | Sbjct 2539 CCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCA--G 2596 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| ||||| || ||||| | |||||||| || || || || Sbjct 2597 ATAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTG 2656 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| ||||||| | || |||||||| | ||||| Sbjct 2657 GAATACCTTCTTTATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTA 2716 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || |||||||| ||||| || || |||||||||||||| |||||||| || Sbjct 2717 CCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCATTTT 2768 >seq4760 Length=7449 Score = 116 bits (128), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 |||||| || |||||||| | || ||||| || ||| | | || | | ||| |||| Sbjct 2058 ATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAATATGCGTC-CATTTTCCAATT 2000 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 | || ||||| | |||||||| ||||| || |||||| ||||| || || |||||| Sbjct 1999 GCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATCTTAAATTT 1940 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | ||||| | |||| ||||||| | ||||| || ||| |||||||||| | Sbjct 1939 TAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGTTTTCTCGT 1880 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATT 15179 | |||||||||||||| |||||||| || Sbjct 1879 TAAGAGTTTTTACAAAGATTTGCATTTT 1852 >seq4449 Length=67262 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | | || || ||||| | ||||| |||||||| || ||||| || Sbjct 64508 GCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGA 64449 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | ||||| | ||||||||||| |||||||||||||||| || || Sbjct 64448 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGG 64389 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||| || ||||| ||| ||| ||| ||| |||| |||||||| || || Sbjct 64388 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAAC 64329 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || |||||||| || || || || || || || || ||||| || Sbjct 64328 CTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATGTT 64278 >seq56942 Length=2534 Score = 104 bits (114), Expect = 2e-17 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 ||||| || ||||| || || || |||||||||||||| ||| || ||| || | | Sbjct 265 AAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCG--GACAATGTGCGTCCAT 208 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | |||||||||||| | |||| ||| || || || || || || || || | Sbjct 207 CTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTTAT 148 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATG 15141 | |||||| ||| ||| | || || || || | || ||| || || | ||||| Sbjct 147 CTTGAATTTTCGCTTTGACATTCTCAATCGTGTC-CGATGGTTCAACTTCCAGCGTAATC 89 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15183 || ||||| ||||| ||||| ||||| |||||||| ||| || Sbjct 88 GTCTTACCAGTCAGCGTTTTCACAAAGATTTGCATTTTTCAA 47 >seq2705 Length=26899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| ||||| | ||||| | || ||||| || || || |||||| || | || || Sbjct 26028 TTCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATC 26087 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||| ||||||| | || ||||| ||| | |||||| | ||||||||||| Sbjct 26088 TTGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGT 26147 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||| || | |||||||||||||| |||||||| || Sbjct 26148 TTTCCCGGGAAGAGTTTTTACAAAGATTTGCATTTT 26183 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | || ||||| || || || |||||| || | || || ||||| | Sbjct 26527 CCAGCAGAAATTAAACGTTGCTGAACGGGTGGAATACCATGTTTATCTTGGATTTTAGAT 26586 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | || ||||| ||| | |||||| | |||||||||||||| || | ||| Sbjct 26587 TTTACATTCTCGATAGTGTCGGAAGGTTCTACCCCCAAGGTAATGGTTTTCCCGGGAAGA 26646 Query 15157 GTTTTTACAAAAATTTGCATATT 15179 ||||||||||| |||||||| || Sbjct 26647 GTTTTTACAAAGATTTGCATTTT 26669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357124411004690