Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4449 127 2e-24 seq10185 95.1 1e-14 seq24798 82.4 7e-11 >seq4449 Length=67262 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| |||| |||||||||||||| | ||||| |||||||| |||||||| || Sbjct 64510 GCGCCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCA 64451 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| ||| || |||||||| ||||| | ||||| ||||| ||||| ||| Sbjct 64450 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGA 64391 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || ||||| |||||| ||| | | || |||| | ||||| || || | ||| Sbjct 64390 GGAATTCCCTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTC 64332 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | || | |||||||| || || || || || || ||||||||| Sbjct 64331 AACCTCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCATG 64280 >seq10185 Length=35228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| ||||| || | ||||| ||| | || |||||||| || ||||| || || Sbjct 2538 TCCACCACGTAAGCGGAGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGA 2597 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || | || || ||||| | ||||| || |||||||| || || Sbjct 2598 TAATGTGCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 2657 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || || ||| ||| |||| | | |||| || |||| | || | Sbjct 2658 AATACCTTCTTTATCT-TGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTA 2716 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | ||||| ||||| |||||||||||||| || ||||| Sbjct 2717 CCTCCAAGGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 >seq24798 Length=2166 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||||| |||||||||||||||| ||| | ||| || || | |||||| |||| Sbjct 956 CCACCGCGTAGGCGCAACACCAAATGTAGCGTCGCCTCGTTCTGCACATTGTAGTCGCGT 1015 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || ||||||||| || ||||| ||||| || |||| || | || Sbjct 1016 AAAGTGCGGTGGTCTTCTAGCTGTCGGCCTGCGTATATCAAGCGTTGCTCTTCTGCTGGC 1075 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTC-TCGAC 127065 | ||||||| ||| || ||| | ||| ||| ||||| ||| ||| || || Sbjct 1076 AAATGCTCCTTGCTTTGGATCCTCATCTTCACCTGTGCGATGGTGT-CGTGCTCTTCCAC 1134 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTA 127119 | | |||| || || ||| || ||||||| || ||||| ||||| Sbjct 1135 CGCCAATGTCAGTGTACGGCATTGCAGTGTCCTTACAAATATTTGCATTGCTTA 1188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475135651048160