Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq37138 255 5e-63 seq10185 122 8e-23 seq56942 111 1e-19 seq4449 104 2e-17 seq2705 89.7 5e-13 seq4760 87.8 2e-12 seq32606 86.0 6e-12 >seq37138 Length=11844 Score = 255 bits (282), Expect = 5e-63 Identities = 707/1076 (66%), Gaps = 30/1076 (3%) Strand=Plus/Minus Query 123270 GTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCAC 123326 || |||||||| ||| ||| | || ||| | || || || |||| || ||||| Sbjct 4968 GTAGACCAGGGTGGCGGAAAAAGGCCTGGTGCGTTTGCTATATACTTAGAGCCTTGGCAT 4909 Query 123327 GTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCC 123386 ||| | | ||| |||||| | |||||| || | || || ||| | | ||| Sbjct 4908 TCGGATATTTTCGAGTTTTTAGACTTAAAAAAAAATACAGGAAAAGAGGAACACAGAGCA 4849 Query 123387 CGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGAC 123446 | || || || ||||| | ||| | || ||| |||| ||| |||||||| || || Sbjct 4848 AGAGACTTATTTTACGCCCTCTGGATTCCTGATCTGTTCATGAGACGCGTAGAATCTGAT 4789 Query 123447 GGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGAGCGACGTTTACGGCAA 123505 |||| ||||| || ||||||||| | ||||| || ||||| || |||| || | Sbjct 4788 GGCGACTGGTCACTTATGTGTCCCCACAAATGTCCAGGGCTTGAT-GAAGTTTGGGGAGA 4730 Query 123506 TCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----AACAGGTTAGTCAG 123560 | ||||| ||||| || | |||| || |||||| || ||| | | | Sbjct 4729 AGAATTTGAAGAGTTATATGAAAAATATGAAAAAGAAGGCCGTTTCAATAGGAAAATTAA 4670 Query 123561 -GTTCCGGCACGT-GATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGC 123618 | || | ||| | | |||| | || || ||| | ||||| ||||| ||||| | Sbjct 4669 AGCTCAGTCACTTTGGTTTGCT-------ATCATTGAAGCCCAAGTAGAAACAGGAACAC 4617 Query 123619 CGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAA 123678 |||| ||| | || || || | || ||||| |||| ||||| | || | || || | Sbjct 4616 CGTATATGTTGTATAAGGATTCTTGTAACAGAAAAAGTAATCAAAAAAATATTGGTACCA 4557 Query 123679 TAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA--CAGCGATGCCGATCAAGTGGC 123736 | ||||| || ||| | || | |||||| ||||||| ||||| | ||| | | || Sbjct 4556 TCAAATGCAGCAATTTGTGTACTGAAATTGTCGAATATTCAGCGC--CAGATGAGATAGC 4499 Query 123737 CGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCGTCGAAAACGGCGCTTTT 123791 ||| || ||| | || || ||| | || || || | | || | | | || | Sbjct 4498 CGTTTGCAATCTAGCATCTATTGCTCTTAACATGTTCATTTCTGCTAATAAGTC--TTAT 4441 Query 123792 AATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATC 123851 |||| |||| ||| ||| |||| |||||||| ||| |||||||| ||||| || Sbjct 4440 GATTTTCAAAAGCTTAAAGAAGTAACTAAAACTGTTACAAAAAATTTGAATAAAATCATA 4381 Query 123852 GATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTC 123911 ||| | |||| ||||||| | ||||| |||||| ||| || |||| | Sbjct 4380 GATATAAATTATTATCCTCTTCCTGAAGCCAAGAAATCTAATATGAGGCATCGACCCATA 4321 Query 123912 GGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGC 123971 ||| | || |||| || || || || || || || || |||| || || |||||| Sbjct 4320 GGAATTGGAGTTCAGGGTTTTGCAGATGCACTTATACTGATGCGTTATCCATATGAAAGC 4261 Query 123972 GACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAG 124031 || ||||| | ||||| |||| |||||| |||||||| || || || || || ||| Sbjct 4260 GAGCAAGCATATTTGCTAAATATACAAATATTTGAAACAATCTACTATGGAGCATTAGAG 4201 Query 124032 GCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCG 124091 || ||||| ||| | ||| || | ||| | || ||| || | || || || | Sbjct 4200 GCAAGCTGTGAATTAGCGGAAGTGTTCGGTCCTTATGAATCATATGAAGGGAGTCCTGTA 4141 Query 124092 AGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGG 124151 ||| ||| || || || |||||||||||||||| ||| || ||||| |||||||| ||| Sbjct 4140 AGCAAAGGCATATTACAATACGACATGTGGAATGTTACGCCAACAAACTTGTGGGATTGG 4081 Query 124152 AGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTAC 124211 | | |||||| | | || | | | || | || || || | | || || | Sbjct 4080 AATGCTTTAAAGGAGAGAATTCAAAAGTATGGCATACGAAATTCTTTACTTGTTGCTCCC 4021 Query 124212 ATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACT 124271 ||||| || ||| | || ||||||||| | || || || |||||||| || || | ||| Sbjct 4020 ATGCCTACAGCATCAACAGCTCAAATTCTTGGGAATAATGAATCCTTTGAACCTTATACT 3961 Query 124272 AACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCA 124327 ||| | ||| | || || ||| | || || || ||||| | |||||||| Sbjct 3960 TCTAATATATACACCAGGCGTGTTTTATCTGGTGAATTCCAAGTTGTTAATCATCA 3905 >seq10185 Length=35228 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || ||||| || || ||||||||||| || | || ||| || Sbjct 2556 CACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCTTC 2615 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | ||||| |||||||| || || ||||| |||||||||||||| Sbjct 2616 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCTTG 2675 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | || | || || |||| || || || | |||| ||||| Sbjct 2676 AATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGTTTT 2735 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||||||||||||| |||||||| Sbjct 2736 CCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 >seq56942 Length=2534 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| || | || ||||| ||||||||||| || || || ||| | Sbjct 280 CCGCCACGCAGACGCAAAACCAAGTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCG--G 223 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| || | ||||| || ||| | |||| |||||||| || |||| Sbjct 222 ACAATGTGCGTCCATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCG 163 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | || || ||||||||||||||||| ||||| || | ||||| || | || | Sbjct 162 GTATACCCTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAA 103 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || |||| ||| || || || || ||||| ||||| |||||||| Sbjct 102 CTTCCAGCGTAATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq4449 Length=67262 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | |||||| | ||||| || ||||| ||||||||||| || || | Sbjct 64507 CCACCACGTAGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAG 64448 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| ||||| || || ||||||| || || || || || ||| Sbjct 64447 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGA 64388 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||| || ||||| || ||||| ||| | || || || | ||| || Sbjct 64387 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACC 64328 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | |||||||| ||||| || || || || || ||||| Sbjct 64327 TCAAGAGTGATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCAT 64281 >seq2705 Length=26899 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 ||||||| || || | | | ||| || || || ||||| || | ||||||||| | | Sbjct 25949 TTATTCCACCACGCAAGCGGAGCACCAGTTGAAGTGTTGACTCTCTCTGGATATTAGAGT 26008 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | | || | || |||||||| | || || | || || |||||||| | | Sbjct 26009 CAGTTAATGTGTGTCCATTTTCCAATTGCTAACCAGCAGAAATTAAACGTTGCTGAACGG 26068 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || | ||||||||| ||||| ||| | || | |||||||||| | Sbjct 26069 GTGGAATACCATGTTTATCTTGGATTTTAGATTTTACATTCTCGATAGTGTCGGAAGGTT 26128 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | | |||| ||||| |||| |||||||||||||| |||||||| Sbjct 26129 CTACCCCCAAGGTAATGGTTTTCCCGGGAAGAGTTTTTACAAAGATTTGCAT 26180 >seq4760 Length=7449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGA--ATC 45187 ||| ||||| || ||||| || || | |||||| || || ||| | | | | || Sbjct 2064 CACCAGATGAAGTGTTGAATCTTTCTAGATATTGTAGTCCGCTAA---TATGCGTCCATT 2008 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||||||| || || || | ||||| ||||| || || || ||||| ||||||||||| Sbjct 2007 TTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGCTCTGGTGGAATACCTTCTTTATC 1948 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || |||||| ||| || ||| || || |||| || | || | ||| || Sbjct 1947 TTAAATTTTAGCTTTTATATTTTCGGTAGTATCTGAAGGTTCTAGCTCCAAGTTAATGGT 1888 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | |||||||||||||| |||||||| Sbjct 1887 TTTCTCGTTAAGAGTTTTTACAAAGATTTGCAT 1855 >seq32606 Length=18579 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || ||||| | || ||||||||| | || | || | ||| || Sbjct 7238 CACCAGATGAAGTGTTGACGCTTTCTGGATATTAAAGTCAGATAATGTGTGTCCATCTTC 7179 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 7178 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGCTCCGGTGGAATACCTTCTTTATCTTG 7119 Query 45251 AATTTTT 45257 || |||| Sbjct 7118 AACTTTT 7112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451656095442640