Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq56942 132 1e-25 seq10185 102 2e-16 seq4449 86.0 1e-11 >seq56942 Length=2534 Score = 132 bits (146), Expect = 1e-25 Identities = 158/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || ||||| |||||||| | ||||||||| | ||| || | ||||||||| ||||| Sbjct 257 GTGAAGCGTCGATTCCTTTTGTATGTTGTAGTCGGACAATGTGCGTCCATCTTCGAGCTG 198 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || |||||||| ||||| ||||| || || || || ||| || ||||| || Sbjct 197 TTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTTATCTTGAAT-TT 139 Query 199546 TTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | |||| || || | ||||| | || ||| || |||| ||| ||||||||||| | Sbjct 138 TCGCTTTGACATTCTCAATCGTGTCCGATGGTTCAACTTCCAGCGTAATCGTCTTACCAG 79 Query 199605 TGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | || ||||||||||| ||||| |||||| Sbjct 78 TCAGCGTTTTCACAAAGATTTG---CATTTT 51 >seq10185 Length=35228 Score = 102 bits (112), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || ||||| || |||| || ||||||| || || | ||||||| Sbjct 2554 AGCACCAGATGAAGTGTTGACTCTTTCTGGATATTATAGTCAGATAATGTGCGTCCATCT 2613 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || || || || | ||| ||||| || || ||| |||||| || Sbjct 2614 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTTTATCT 2673 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || || |||| || || | | |||||| ||||| || || || Sbjct 2674 TGAAT-TTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAGGTAATAGT 2732 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || |||||||| ||||| ||||| |||||| Sbjct 2733 TTTCCCGGTAAGAGTTTTTACAAAGATTTG---CATTTT 2768 >seq4449 Length=67262 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || || ||||||| |||||||||| | || | |||||||||||||| || || Sbjct 64478 AGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCC 64419 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 || || || | |||||| || || ||| |||||| ||| ||||||||||| || Sbjct 64418 AGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGAATCTTGGCTTT 64359 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||||| || || | | || || || | ||||| || || ||||| || || Sbjct 64358 GACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTGATGGTTTTGCCCGTTAGGGT 64299 Query 199612 TTTCACAAAAATTTG 199626 || || || || || Sbjct 64298 CTTAACGAAGATCTG 64284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177993643546078