Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4167 389 3e-102 seq40 129 4e-24 seq22686 123 2e-22 seq3941 118 8e-21 seq8445 111 1e-18 seq5301 105 5e-17 seq10562 96.9 3e-14 seq37138 89.7 4e-12 >seq4167 Length=34597 Score = 389 bits (430), Expect = 3e-102 Identities = 1005/1513 (66%), Gaps = 34/1513 (2%) Strand=Plus/Plus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||| || || || || ||||| ||||| || ||| || ||||| | Sbjct 4397 ATTGGTAATGGTGATCTTGTTCTCCTTGTTGGTTGAACGCTCCAAGGCGGTTACATTCAA 4456 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 || || |||||||| | ||| ||||| ||||| ||||| || || || | | || || Sbjct 4457 GATGCCGTTGGCATCAATATCGAATGTCACTTCGATTTGTGGCACACCGCGTGGTGCTGG 4516 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||| || || ||| | ||| | |||| || ||||| || || | ||||| Sbjct 4517 TGGAATGCCAGACAACTCGAATTTGCCCAACAGGTTGTTATCCTTGGTCATAGCACGTTC 4576 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||| ||| | | ||||| || ||| || || || || || || || ||| ||| Sbjct 4577 ACCTTCGTACACCTGGATCAAGACACCAGGCTGGTTGTCAGAGTAGGTGGTGAATG-TCT 4635 Query 517453 GGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | ||| || || || || ||||| | | || | | |||| | ||| || | Sbjct 4636 GAGTTTGCTTGGTTGGGATGGTAGTGTTCCGCTTGATCAACACGCTCATGACACCGCCAG 4695 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | || || | ||| | || | || | ||||| | | | | || ||| | || || Sbjct 4696 CAGTCTCAATACCCAACGACAATGGTGCAACATCGAGCAACAGCAAATCTTGCACTTCTT 4755 Query 517572 CATCAGTTT--GACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 | | || | | ||||| | || ||||| | |||||||||||| |||||||| || Sbjct 4756 G-TGATTTGTCGCCTTGCAAGA-TGGCAGCTTGCACAGCAGCACCATAGGCAACAGCCTC 4813 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAA--GTTG 517686 ||||||||| | | | || | | || |||||||| |||| ||| || || |||| Sbjct 4814 ATCAGGATTGATTGACTTGTTCAACTCCTTGCCATTGAAGAAATCTTGCAACAAACGTTG 4873 Query 517687 TCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 517746 | ||||| |||||||| | ||| || || || || ||||| || || | ||||| Sbjct 4874 T---ACCTTTGGAATACGTGTTGAGCCACCGACCAACACAATATCGTGAATGGCCGATTT 4930 Query 517747 ATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGT 517805 |||| ||| | ||| ||| | || |||||||| || | ||| | ||||| | Sbjct 4931 GTCCAATTTGGCATCACGCAAAGCCTTCTCAACGGGGTCCATGGT-GCTACGGAACAAAT 4989 Query 517806 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTC 517863 | | | | || ||||| ||| | ||| || || | || || ||| | || || Sbjct 4990 CAGCATTCAACTCCTCGAAACGAGCACGAGT--GATGGATGTATAGAAGTCAGTGCCCTC 5047 Query 517864 GAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACG 517923 |||||| ||||| | |||||| | | || || || || || || | ||| || ||||| Sbjct 5048 GAACAAGGAATCGATTTCAATACTGGCCTGTGTGGATGAGGACAGAGTACGCTTTGCACG 5107 Query 517924 TTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTGATTCAAATCTGTT 517978 || || ||||| | || | || | | |||| |||||| | | ||| | Sbjct 5108 CTCGCAAGCTGTACGCAGACGACGCAGAGCACGCTTGTTGCTGGTA-----AGATCCTTC 5162 Query 517979 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 518038 || | || | |||||| || | ||| | || || || ||||||||||||||||| Sbjct 5163 TTGTGCTTGCGCTTGAATTCCTGAACGAAATGGGTGACTAGGCGATTATCAAAATCTTCG 5222 Query 518039 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 518098 || || || | ||| | || | || | | || | ||| | ||||| |||| || Sbjct 5223 CCACCTAAATGAGTGTCACCAGCTGTGGACTTGACCTCGAAGATGCCATCATCAATTGAA 5282 Query 518099 AAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT---CATTTCT 518155 | || | |||||| || || || |||| ||||||||| || ||||| | | Sbjct 5283 AGAATGGAGACATCAAAAGTGCCGCCGCCCAAATCAAAAATCAGCACATTACGCTCGCCA 5342 Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 | || |||||||| | ||||| || | ||||||||||| ||||| || || || Sbjct 5343 GAGGCT---TTTTTATCCAAGCCATAGGCGATGGCAGCAGCAGTAGGTTCGTTGATGATA 5399 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | ||| ||||| | |||||||| || |||||||| || ||||| | |||||||| Sbjct 5400 CGCAACACATTCAAGCCAGCAATAGCGCCGGCATCTTTGGTAGCTTGACGCTGTGAATCA 5459 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 || || || || ||||| || || || |||| | || ||| || | |||||| Sbjct 5460 TTGAAGTAGGCTGGAACTGTGATGACAGCATTTGAGACAGTTTTGCCCAAATAAGCCTCA 5519 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 || |||| ||||| || |||| ||||||||| |||| || ||| | || ||| Sbjct 5520 GCAGTTTCCTTCATCTTTGACAAAACCATTGATGAGATTTCCTCAGGGAAGAATGTCTTC 5579 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 |||| | || | |||| || | |||||| | |||| ||| |||| |||| Sbjct 5580 TTCTCATCCTTGTAGAAAACTTGAATTTTTGGTTTGCCATCAACGCTAACTACTTCAAAT 5639 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 ||||| | |||||||| | || ||| || | || | | ||||| || || Sbjct 5640 GGCCAATGCTTCATATCGGCCTGTACAGCGCTATCCTCGAATTTACGGCCAATCAAACGC 5699 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || ||||| |||||||| ||||||||||| || || |||||| |||||| ||||| ||| Sbjct 5700 TTGGCATCGAAAATAGTGTTGGTTGGATTCATAGCTACTTGATTTTTGGCAGCATCACCA 5759 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 |||| | | || ||||| || || | ||||| ||||| ||||| |||||||| ||||| Sbjct 5760 ATCAAACGCTCAGTCTCAGTGAAGGCTACATACGATGGTGTTGTACGATTACCCTGATCG 5819 Query 518636 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 518695 || ||||||||||||||||| || | ||| | ||||| || || | |||||||| Sbjct 5820 TTGGCAATAATTTCAACTTTGCCGTGTTGGAAAACACCCACGCACGAGTAGGTTGTTCCC 5879 Query 518696 AAATCAATACCAA 518708 ||||||||||||| Sbjct 5880 AAATCAATACCAA 5892 >seq40 Length=31105 Score = 129 bits (142), Expect = 4e-24 Identities = 289/425 (68%), Gaps = 17/425 (4%) Strand=Plus/Minus Query 517901 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC- 517959 ||||| || | || |||||||| || || ||||| | ||||| || || || | Sbjct 1194 GAAGAGAGCGTGCGCTTAGCACGCTCGCAAGCTGTGCGCAGTCTACGCAACGCACGCACG 1135 Query 517960 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACA 518017 | ||| || ||| |||| || || | ||||| || || ||| | ||| |||| Sbjct 1134 TTCTTGGA-CATATCCTTTTTGTACTTACGTTTGAACTCCTCCACAAA--ATGATTTACC 1078 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 | |||||| || ||||| ||||| ||||| | |||| || | || | | |||| | Sbjct 1077 AAACGATTGTCGAAATCCTCACCGCCCAAATGCGTATCGCCAGCGGTGGACTTGACTTCG 1018 Query 518078 AAAAGT---CCATCTTCAA--GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 || || || || |||| | || | ||| ||||| || |||||||||| || Sbjct 1017 AATAGCGAACCCTCGTCAATTGTGAGTATCGAG--ACATCGAAAGTGCCACCACCCAGAT 960 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTT--GGTTTTTATCAAGACCATACGCAAAAGC 518190 | || || | |||||| |||| ||| | |||||||| | |||||||| || || Sbjct 959 CGAAGATCAAAACATTC--TTCTCACCCTTCAGATTTTTATCCAAGCCATACGCTAAGGC 902 Query 518191 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 ||| || || || || ||||| || | ||| ||||| | |||||||| || ||||| Sbjct 901 AGCCGCGGTGGGCTCGTTAATTATGCGCAACACATTTAAGCCAGCAATAGAGCCAGCATC 842 Query 518251 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGT 518310 |||||| || || | ||||| ||||| ||||| || || || ||||| || || || Sbjct 841 TTTAGTCGCCTGCCGCTGTGAGTCGTTGAAATAAGCGGGTACCGTAATGACAGCGTCGCG 782 Query 518311 TACTT 518315 ||||| Sbjct 781 TACTT 777 >seq22686 Length=27107 Score = 123 bits (136), Expect = 2e-22 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 ||||||| | |||||| || | |||||| || |||||||||||||||| || | |||| Sbjct 4990 TTTTATCCATACCATAAGCTAGAGCAGCTGCCGTTGGTTCATTAATAACTCGTAGGACAT 5049 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | | |||||||||| || |||||||| |||||||| ||||||||||| || ||||| | Sbjct 5050 TTAAACCAGCAATTTGGCCAGCATCTTTTGTGGCTTGCCTTTGTGAATCATTGAAATACG 5109 Query 518286 CAGGAACAGTAATAACGGCAT 518306 | || ||||| | || |||| Sbjct 5110 CTGGTACAGTTACTACCGCAT 5130 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 322302 ||| || || ||||| ||||| |||||||||||||| | | || |||| |||||| || Sbjct 5000 ACCATAAGCTAGAGCAGCTGCCGTTGGTTCATTAATAACTCGTAGGACATTTAAACCAGC 5059 Query 322303 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 322362 ||||| ||| ||| || ||||| || |||| ||||| ||||| ||||||||||| Sbjct 5060 AATTTGGCCAGCATCTTTTGTGGCTTGCCTTTGTGAATCATTGAAATACGCTGGTACAGT 5119 Query 322363 AATAACTGCTTTATTAATAGG 322383 | || || || || | ||| Sbjct 5120 TACTACCGCATTCTTCACAGG 5140 >seq3941 Length=8663 Score = 118 bits (130), Expect = 8e-21 Identities = 205/296 (69%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 517225 AATATTCTTGGATTTGTTTGT--TGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 517282 ||||||||||| ||| ||| | ||| || ||| || ||||| || ||||||||| Sbjct 8344 AATATTCTTGGCATTGCCTGTACTCATT--TCCTTGGCTGTGACATTCAGTATACCATTG 8401 Query 517283 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCT 517342 |||||||||||||| ||||| || | || || || || | | || ||||| || || Sbjct 8402 GCATCCAAATCAAAGGTGACATCTACTTTGGGTACGCCACGTGGTGCTGGTGGTATGCCA 8461 Query 517343 TCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAA 517402 ||||| ||||| |||| || || ||||| || | |||||||| ||||| Sbjct 8462 GTTAAATTGAATGTACCCAACAAGTTGTTGTCTTTGGTCATAGCACGTTCACCTTCGAAC 8521 Query 517403 ATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTA 517462 | ||| ||||| ||| | | ||||||||| | ||| || || || | | |||| || Sbjct 8522 ACTTGAATAGTCACTGCTGGTTGATTATCGGCATATGTGGTGAACGTTTTCGATTGCTTG 8581 Query 517463 CAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTC 517518 || || || | || | ||||| | |||||||||| ||||| || ||||| Sbjct 8582 CATGGTATGCGACTATTGCGCTCAATCAACTTGGTCATAACGCCACCAGCGGTTTC 8637 >seq8445 Length=17405 Score = 111 bits (122), Expect = 1e-18 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 870806 GATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATT 870865 |||| || || ||||||||||| ||||||||||| | || |||||| | ||||| ||| Sbjct 3088 GATTTCTCGTCACCAAATATTGCAAAAGAAATGCACGTCGGGCATTTACGCTCAACGATT 3147 Query 870866 ATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATTAAT 870925 || || || ||| || ||| | || ||| | ||||| ||||| ||| ||||| Sbjct 3148 ATAGGCGATAGTATCTGCAGGCTTTTGGAATTCATGGGACATGATGTGCTGCGTGTTAAT 3207 Query 870926 CATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 ||| | || |||||||| || ||||| || ||||||||||| Sbjct 3208 CATTTAGGCGATTGGGGCACACAATTTGGCATGTTAATTGC 3248 >seq5301 Length=11307 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| |||||| ||||| ||||| | | || || || | |||| ||||| || Sbjct 9978 TGATTTTTGGCCGCATCGCCAATTAAGCGCTCGGTGTCATTGAATGCCACATAGCTGGGT 9919 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 ||||||||||| ||||||||||| ||||| || || |||||| ||| ||||||||||| Sbjct 9918 GTTGTGCGATTGCCTTGATCATTGGCAATGATCTCGACTTTATTATTCTGCCATACACCA 9859 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || | | ||||| || |||||||| || || || Sbjct 9858 ACGCAGGAATAGGTTGTGCCCAAATCAATGCCGATCGC 9821 >seq10562 Length=15860 Score = 96.9 bits (106), Expect = 3e-14 Identities = 205/305 (67%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 634313 GAAATTACTTATGTACCTGGTCTATATAAAATTTATGATGAAGTAATTGTAAATGCGGCA 634372 ||| ||| || ||| |||||||| ||||| || ||||||||| | | || ||||||||| Sbjct 2882 GAACTTAATTTTGTGCCTGGTCTTTATAAGATCTATGATGAAATCCTCGTTAATGCGGCA 2823 Query 634373 GATCATAACAAGAGATGTCAAACATGTAATATTATCAAAGTTGATATCGATCAAAAAACA 634432 ||| |||| || | | || || | || || ||| | ||||| |||| ||| Sbjct 2822 GATAATAAACAGCGCGATAAATCAATGAGCATGATTAAAATCGATATTGATCCCGAAAAG 2763 Query 634433 GGTCAAATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACAT 634492 | ||| || | |||||||| ||| | ||||| || | || ||||| || || Sbjct 2762 AATATAATCTCAATATGGAATAACGGTCAGGGTATCCCAGTGACGATGCATAAGGAGCAA 2703 Query 634493 AATATATGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAA 634552 || || | || ||| | ||||| ||||| | || || || || | || ||| || Sbjct 2702 AAAATGTATGTGCCAACTATGATATTTGGGCATCTCTTGACTTCCTCCAACTAC---AAT 2646 Query 634553 AACGAGGAAAAAACTGT---TGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATT 634609 | || ||||| | || |||||| ||||||| |||||| || || ||||||| Sbjct 2645 GATGATGAAAAGAAAGTAACTGGTGGCCGTAATGGTTATGGCGCCAAACTGTGTAATATT 2586 Query 634610 TATTC 634614 | ||| Sbjct 2585 TTTTC 2581 >seq37138 Length=11844 Score = 89.7 bits (98), Expect = 4e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 400502 GACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCACCTTT 400561 ||| |||||||||||| | ||||| | ||| |||||||||||||||||| | |||| Sbjct 3781 GACAGTTTGGGAAATTTCAGTTAAATCGACAATTAAAATGGCAGCTGATAGAGGAGCTTT 3722 Query 400562 TGTTGATCAAACTCAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGATTAAA 400621 | ||||||||| |||| | | || | || ||| |||| | | || || |||| Sbjct 3721 TATTGATCAAAGTCAGTCTTTTAACATTCACGTTGCAGAACCCAACTATGGAAAGTTAAC 3662 Query 400622 TTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTGAGATC 400681 || || || || || |||| || || ||||| || |||||||||||| | | Sbjct 3661 ATCAATTCATTTCTACGCTTGGAAATCTGGCCTTAAAACTGGAATGTATTATTTGCGCAC 3602 Query 400682 TAAACCAGC 400690 |||||||| Sbjct 3601 AAAACCAGC 3593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777773842556404