Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq37138 612 2e-170 >seq37138 Length=11844 Score = 612 bits (678), Expect = 2e-170 Identities = 1262/1881 (67%), Gaps = 30/1881 (2%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||||| |||| |||| |||| |||||| || ||||||||||| || Sbjct 3562 TTTATCAACAGTAAACTGTATTGCATTAGCGGCTGGTTTTGTGCGCAAATAATACATTCC 3621 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | || | |||| | |||||||| || ||||| || ||| | || Sbjct 3622 AGTTTTAAGGCCAGATTTCCAAGCGTAGAAATGAATTGATGTTAACTTTCCATAGTTGGG 3681 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||||| || ||||| |||| ||| ||||| ||||||||||| || |||||||||||||| Sbjct 3682 TTCTGCAACGTGAATGTTAAAAGACTGACTTTGATCAATAAAAGCTCCTCTATCAGCTGC 3741 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | || | | ||| || || ||||| ||||| || || | | |||| Sbjct 3742 CATTTT--AATTGTCGATTTAACTGAAATTTCCCAAACTGTCTTGTATAAGTCACGAATG 3799 Query 47211 TCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 | || | | | ||||||| ||||| || | | || |||||||| | ||||| Sbjct 3800 GACTTAGGAATAGTTTCTATATTTTGTATAGAACCACGGCTTGATATAATTT-GATTTTT 3858 Query 47268 aat----tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAAC 47323 || |||| ||| | || |||| |||| | | | ||| ||| ||||||| Sbjct 3859 CATGTTGTCATC---CCATAATTCAAGTTCGGTTAGATCTCTGAGAAGGTGATGATTAAC 3915 Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 || ||| ||||| ||||||| || | | | | ||||||||| ||||| ||||| | Sbjct 3916 AACTTGGAATTCACCAGATAAAACACGCCTGGTGTATATATTAGAAGTATAAGGTTCAAA 3975 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 ||||||||||| |||| ||||||||| ||||||||||||||||||| ||||| | ||| Sbjct 3976 GGATTCATTATTCCCAAGAATTTGAGCTGTTGATGCTGTAGGCATGGGAGCAACAAGTAA 4035 Query 47444 GCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 ||||| || ||||| ||||| || ||||||||||| | | Sbjct 4036 AGAATTTCGTATGCCATACTTTTGAATTCTCTCCTTTAAAGCATTCCAATCCCACAAGTT 4095 Query 47504 TGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATT 47563 || ||| ||||||||| | || ||||| | || ||||| |||| ||| || | Sbjct 4096 TGTTGGCGTAACATTCCACATGTCGTATTGTAATATGCCTTTGCTTACAGGACTCCCTTC 4155 Query 47564 ATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATA 47623 ||||| || |||||||||| | | || || | |||||| ||||| || ||||| | ||| Sbjct 4156 ATATGATTCATAAGGACCGAACACTTCCGCTAATTCACAGCTTGCCTCTAATGCTCCATA 4215 Query 47624 ATATATTGTTTCAAATATTTTTATGTTTAG---AT-TCCTTGCTTCTGATGATTCAAAAG 47679 || |||||||||||||||| ||| ||||| || | |||||| | | |||| | | Sbjct 4216 GTAGATTGTTTCAAATATTTGTATATTTAGCAAATATGCTTGCTC--GCT--TTCATATG 4271 Query 47680 GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTAT 47739 |||| | || |||||| || || ||||| ||||| || || |||| || Sbjct 4272 GATAACGCATCAGTATAAGTGCATCTGCAAAACCCTGAACTCCAATTCCTATGGGTCGAT 4331 Query 47740 GAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTAT 47799 | | ||||||| || ||||| || | ||||| | ||||||||||| ||||||| Sbjct 4332 GCCTCATATTAGATTTCTTGGCTTCAGGAAGAGGATAATAATTTATATCTATGATTTTAT 4391 Query 47800 TTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CTTGT 47856 | | | | |||| | | || | ||||||| | ||| | Sbjct 4392 TCAAATTTTTTGTAACAGTTTTAGTTACTTCTTTAAGCTTTTGAAAATCATAAGACTTAT 4451 Query 47857 TATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTG 47916 || || ||| | ||||| || |||||||||||||| || || |||| ||||| || Sbjct 4452 TAGCAGAAATGAACATGTTAAGAGCAATAGATGCTAGATTGCAAACGGCTATCTCATCTG 4511 Query 47917 GATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTT 47976 | | ||||| | ||||||| ||| | ||| | |||||||| ||||| | ||||| Sbjct 4512 GCGCTGAATATTCGACAATTTCAGTACACAAATTGCTGCATTTGATGGTACCAATATTTT 4571 Query 47977 GATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036 |||||| | ||||||| | ||||| || | |||| | |||||||| ||||||| Sbjct 4572 TTTGATTACTTTTTCTGTTACAAGAATCCTTATACAACATATACGGTGTTCCTGTTTCTA 4631 Query 48037 TCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAA--CAGCTCTAGCTTT 48094 || | ||||||||||| ||||| | | ||| || || | | | | Sbjct 4632 CTTGGGCTTCAATGATAGCAAACCAAAGTGACTGAGCTTTAATTTTCCTATTGAAACGGC 4691 Query 48095 ATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAA 48154 || | | ||| ||||| |||||||| |||||||| || || | || | ||| | Sbjct 4692 CTTCT--TTTTCATATTTTTCATATAACTCTTCAAATTCTTCTCCCCAAACTTCATCAAG 4749 Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 ||| ||||||| | |||||||| | |||||| || ||||| || ||| | |||| Sbjct 4750 CCCTGGACATTTGTGGGGACACATAAGTGACCAGTCGCCATCAGATTCTACGCGTCTCAT 4809 Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 || | ||| || ||||| || || |||||| || || | ||| |||| || || || Sbjct 4810 GAACAGATCAGGAATCCAGAGGGCGTAAAATAAGTCTCTTGCTCTGTGTTCCTCTTTTCC 4869 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 |||| |||| | || | ||| || | ||||| | |||||| || ||||| ||||| Sbjct 4870 TGTATTTTTTTTTAAGTCTAAAAACTCGAAAATATCCGAATGCCAAGGCTCTAAGTATAT 4929 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | |||| || | ||| || || || |||| ||| | || ||| || | Sbjct 4930 AGCAAACGCACCAGGCCTTTTTCCGCCACCCTGGTCTACATAACGTGCTACATTATTGAA 4989 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 || |||||||| || || | ||||| ||| | ||||| || || | || | |||| Sbjct 4990 CACCCTTAACATAGGCACTAAGCCATTAGATGTGCCATTAGTGCCGCATATTGATGTTCC 5049 Query 48455 ACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 |||||| ||| | || || || || || || || |||||| || | || Sbjct 5050 TTTAGCTCGAATACAATGAACATTTATTCCAATTCCTCCCGCTGATTTAGAAATCATTGC 5109 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 |||| ||| || | | | |||||||||| || ||| ||| ||| | | | ||| Sbjct 5110 ACACTGTTCAACTGATTTAAAAATTCCTTCAATTGAATCTGCTACCATTGTAAGCAAAAA 5169 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 |||| || | || || | | ||| | | |||||| |||||||| ||||| | Sbjct 5170 ACAAGATGATAACTGAGGGCGTCTTGTTGCAGCCGCAAATAAAGTTGGAGAGGCATGGGT 5229 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 ||| ||||||| || | ||| || ||||||||||| ||| ||| ||||| ||| Sbjct 5230 AAAATATTTCTCAGAGAGCAAATTGTATGTTTCAATTGCAGCATCGATATCTTCACCATG 5289 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 ||| || || ||||| | ||| ||||| | || ||||| || |||| ||| || | Sbjct 5290 TATTCCAATCGATACTCTCATCAACATGTGCTGTGGTCTCTCCACAACTTTACCTTTAAC 5349 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTT 48814 ||| | | |||||| ||| | || ||||| ||||| || |||||| ||||||| Sbjct 5350 TTTAAGCAAATATGAACGTTCAAGAGTCTTAAAGCCAAAGTAATTGTATCCAAAGTCGCG 5409 Query 48815 ATCATTAATAATTGATGAATT 48835 |||| || |||| ||||| Sbjct 5410 GTCATATATGATTGCCGAATT 5430 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 48927 TTTTTTGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCT 48986 ||||| ||||||||||| | ||||||| || ||| | ||||||||| || ||||||||| Sbjct 5938 TTTTTGGTTTCTTTATGCAAGTTAGATACAGCTATCCGAGCAGCTAAAATCGCATAATCT 5997 Query 48987 GGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTA 49046 | |||| |||||||| | ||||| || || || || |||| | ||||| || Sbjct 5998 GCATGATTTGTTGTAAGACTGGCGGATATCTCGGCAGCCAAATTATCGAGTTCTTGGGTC 6057 Query 49047 GTTACACCTGTATATATTCCTTGAATAACTTT 49078 || ||||| ||| | ||| | |||||| || Sbjct 6058 GTGACACCGCAATACAATCCGTTAATAACCTT 6089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561677142599760