Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4167 297 2e-74 seq22686 132 4e-25 seq10474 129 5e-24 seq10185 129 5e-24 seq8445 98.7 8e-15 seq56942 95.1 1e-13 seq5301 89.7 4e-12 seq40 89.7 4e-12 seq4449 87.8 1e-11 >seq4167 Length=34597 Score = 297 bits (328), Expect = 2e-74 Identities = 394/542 (73%), Gaps = 4/542 (1%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||||| ||||| || || || || ||||||| ||| | || ||||||||| Sbjct 5890 GGTATTGATTTGGGAACAACCTACTCGTGCGTGGGTGTTTTCCAACACGGCAAAGTTGAA 5831 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| ||||| ||||| | || || ||||| ||||| | ||||| || ||| Sbjct 5830 ATTATTGCCAACGATCAGGGTAATCGTACAACACCATCGTATGTAGCCTTCACTGAGACT 5771 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | ||| |||||||||| || ||| |||||| || ||||| ||||| |||||| Sbjct 5770 GAGCGTTTGATTGGTGATGCTGCCAAAAATCAAGTAGCTATGAATCCAACCAACACTATT 5711 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 || ||||| || ||||| ||||| | | || | ||| |||| ||||| |||||| Sbjct 5710 TTCGATGCCAAGCGTTTGATTGGCCGTAAATTCGAGGATAGCGCTGTACAGGCCGATATG 5651 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCAT 550297 ||||||||||| || || | |||| ||| ||| ||||| | ||| ||| | || Sbjct 5650 AAGCATTGGCCATTTGAAGTAGTTAGCGTTGATGGCAAACCAAAAATTCAAG-TTTTCTA 5592 Query 550298 GAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356 |||||| | || | ||| | || || |||| ||||| |||||||| || || Sbjct 5591 CAAGGATGAGAAGAAGACATTCTTCCCTGAGGAAATCTCATCAATGGTTTTGTCAAAGAT 5532 Query 550357 GAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTAC 550415 ||| |||| || |||| | |||| ||| | || | |||| || || || || | Sbjct 5531 GAAGGAAACTGCTGAGGCTTAT-TTGGGCAAAACTGTCTCAAATGCTGTCATCACAGTTC 5473 Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 |||| || || ||||| ||||| ||||||||||| |||||||| || ||||||||| Sbjct 5472 CAGCCTACTTCAATGATTCACAGCGTCAAGCTACCAAAGATGCCGGCGCTATTGCTGGCT 5413 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATA 550535 | ||||| | ||||| ||||| ||||||||||||||||| | || ||||| | |||| Sbjct 5412 TGAATGTGTTGCGTATCATCAACGAACCTACTGCTGCTGCCATCGCCTATGGCTTGGATA 5353 Query 550536 AA 550537 || Sbjct 5352 AA 5351 >seq22686 Length=27107 Score = 132 bits (146), Expect = 4e-25 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 550343 GTTTTAATGAAAATGAAACAAACAGCC--AGTGCTTTTGT-TGGTCAAGAAGTTACGGAT 550399 |||||||||||||||||| | ||||| | | |||| | ||| | | | | || Sbjct 5185 GTTTTAATGAAAATGAAAGAGACAGCTGAATCGTATTTGAATTGTCCTG---TGAAGAAT 5129 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || ||| ||||||||||||| ||||| ||||| |||||| | ||||| || ||||||||| Sbjct 5128 GCGGTAGTAACTGTACCAGCGTATTTCAATGATTCACAAAGGCAAGCCACAAAAGATGCT 5069 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | |||||||| | ||||| || || |||| |||||||| || || ||||| || Sbjct 5068 GGCCAAATTGCTGGTTTAAATGTCCTACGAGTTATTAATGAACCAACGGCAGCTGCTCTA 5009 Query 550520 GCATATGGACTTGATAAACATAATGATCAA 550549 || ||||| | |||||| | ||||| || Sbjct 5008 GCTTATGGTATGGATAAAACTGATGATAAA 4979 >seq10474 Length=16671 Score = 129 bits (142), Expect = 5e-24 Identities = 166/224 (74%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 550315 ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGC 550374 |||| | || ||| |||| || |||||||||| || ||||| | || || || Sbjct 9492 ATTTGCGCCCGAAGAAATCTCCGCTATGGTTTTGGGCAAGATGAAGGAGACCGCTGAGGC 9551 Query 550375 TTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 || | | ||| |||||| | || | || || | || || ||||| || |||||||| Sbjct 9552 TTATTTGGGT-AAGAAGGTGACACACGCTGTCGTTACGGTGCCAGCCTACTTTAATGATG 9610 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATT 550492 ||||||||||||| || ||||||||||| ||| ||||||||| | |||||| | || ||| Sbjct 9611 CACAACGTCAAGCCACCAAAGATGCTGG-CGTCATTGCTGGATTGAATGTTATGCGCATT 9669 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| || || ||||| || |||| ||||| | ||||| Sbjct 9670 ATCAATGAGCCCACCGCTGCCGCTATTGCCTATGGTTTGGATAA 9713 Score = 89.7 bits (98), Expect = 4e-12 Identities = 301/465 (65%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 552111 GTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAAT-GTT 552169 |||||||||||||| | || || || || ||| | ||||||||| | | | | ||| Sbjct 10141 GTACATGAAATTGTTTTGGTCGGCGGCTCCACACGCATTCCTAAAGTGCAACAGCTCGTT 10200 Query 552170 AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGC 552229 ||| ||| || | || || || | || ||||||| ||||| ||||| || Sbjct 10201 AAGGACTTCTT-CGGCGGCAAGGAACCATCACGCGGTATTAATCCCGATGAAGCTGTCGC 10259 Query 552230 CTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAA 552289 |||||||| || | ||||| | | |||| || || || ||| | | || || Sbjct 10260 ATATGGTGCTGCTGTACAAGCTGGTGTTCTATCAGGTGAACAAGAT-ACAGACGCCATTG 10318 Query 552290 TATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTAT 552349 | |||| | ||||| | ||| | | | ||| | || |||||||| ||| | || Sbjct 10319 TGTTGT-----TGGATGTCAATCCATTGACCATGGGTATTGAGACAGTTGGCGGTGTAAT 10373 Query 552350 GACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTAC 552409 ||| || | || | || || ||||||| || ||||| | | || || || Sbjct 10374 GACCAAGTTAATTCCACGCAACACCGTTATTCCTACAAAGAAATCACAAATCTTCTCGAC 10433 Query 552410 GTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCAC 552469 ||| ||||||||| |||| || ||||| | | ||||| ||| | | || Sbjct 10434 TGCTTCCGATAATCAACACACTGTCACCATTCAGGTCTACGAAGGTGAACGTCCCATGAC 10493 Query 552470 TAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGG 552529 |||||| || || | |||| || |||| || ||||| || || || ||||| Sbjct 10494 TAAAGACAACCATTTGTTGGGTAAATTCGATTTGACTGGCATTCCACCAGCGCCACGTGG 10553 Query 552530 AGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 | || ||||||||||| ||||||| |||||||| || || || Sbjct 10554 CATTCCACAAATTGAAGTGTCTTTCGAGATCGATGCAAACGGCAT 10598 >seq10185 Length=35228 Score = 129 bits (142), Expect = 5e-24 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317 ||||| || |||||||| || ||| | | ||| ||||| || |||| || || | | Sbjct 2551 CGGAGCACCAGATGAAGTGTTGACTCTTTCTGG--ATATTATAGTCAGATAATGTGCGTC 2608 Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 |||||| | ||| || || |||||||| | | ||||||||| || ||||| ||||||| Sbjct 2609 CATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCTT 2668 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTA 563436 ||||||||||||| |||||| ||| || ||||| | | ||| | | || ||| Sbjct 2669 TATCTTGAATTTTAGCTTTTACATTCTCGATAGTATCCGAAGGTTCTACCTCCAAG-GTA 2727 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || ||||||||||| || || |||||||| Sbjct 2728 ATAGTTTTCCCGGTAAGAGTTTTTACAAAGATTTGCAT 2765 >seq8445 Length=17405 Score = 98.7 bits (108), Expect = 8e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 930665 TGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCAT 930724 |||||| || |||||||||||||| ||||||||||| | || ||||| || || || || Sbjct 3087 TGATTTCTCGTCACCAAATATTGCAAAAGAAATGCACGTCGGGCATTTACGCTCAACGAT 3146 Query 930725 TATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAA 930784 ||| || || | | || || | | |||| ||| | | || | || || || Sbjct 3147 TATAGGCGATAGTATCTGCAGGCTTTTGGAATTCATGGGACATGATGTGCTGCGTGTTAA 3206 Query 930785 TCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 |||| | || |||||||| ||||||||||| ||||||||||| Sbjct 3207 TCATTTAGGCGATTGGGGCACACAATTTGGCATGTTAATTGC 3248 >seq56942 Length=2534 Score = 95.1 bits (104), Expect = 1e-13 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || ||||| || || || || || | ||||||||| || || || || ||||| Sbjct 209 ATCTTCGAGCTGTTTGCCAGCGAAGATCAGACGTTGCTGATCTGGCGGTATACCCTCTTT 150 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTA 563436 |||||||||||| ||| || |||||| || || | || || || ||| || ||| Sbjct 149 ATCTTGAATTTTCGCTTTGACATTCTCAATCGTGTCCG-ATG-GTTCAACTTCCAGCGTA 92 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || |||||||| || ||||| || || |||||||| Sbjct 91 ATCGTCTTACCAGTCAGCGTTTTCACAAAGATTTGCAT 54 >seq5301 Length=11307 Score = 89.7 bits (98), Expect = 4e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||||| || || || ||| || |||||||| ||||| ||| ||| Sbjct 9820 AGCGATCGGCATTGATTTGGGCACAACCTATTCCTGCGTTGGTGTATGGCAGAATAATAA 9879 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || ||||||||||||||||| || | || || || ||||| | |||| Sbjct 9880 AGTCGAGATCATTGCCAATGATCAAGGCAATCGCACAACACCCAGCTATGTGGCATTCAA 9939 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || || | ||| |||| ||||| || ||| |||| Sbjct 9940 TGACACCGAGCGCTTAATTGGCGATGCGGCCAAAAATCA 9978 >seq40 Length=31105 Score = 89.7 bits (98), Expect = 4e-12 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 550393 TACG-GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| || || || || || ||||| || ||||| || |||||||| || || || |||| Sbjct 780 TACGCGACGCTGTCATTACGGTACCCGCTTATTTCAACGACTCACAGCGGCAGGCGACTA 839 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 |||||||||| ||||||||| | ||||| | || || || || || || || || | Sbjct 840 AAGATGCTGGCTCTATTGCTGGCTTAAATGTGTTGCGCATAATTAACGAGCCCACCGCGG 899 Query 550512 CTGCACTTGCATATGGACTTGATAAACAT 550540 |||| | || ||||| | |||||| || Sbjct 900 CTGCCTTAGCGTATGGCTTGGATAAAAAT 928 >seq4449 Length=67262 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | || | ||| | ||| |||||| |||||||| |||| || || | Sbjct 64498 AGACGCAACACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAGAGGGTGCGG 64439 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || ||||| || ||||| || | | || ||||| ||||||||||| ||| Sbjct 64438 CCATCTTCCAGCTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATTCCCTCT 64379 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || ||||| || ||| || || || ||||||| | | | || ||||| Sbjct 64378 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAGGGCTCAACCTCAAGAGTG 64319 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| || || || || |||||||| || ||||| Sbjct 64318 ATGGTTTTGCCCGTTAGGGTCTTAACGAAGATCTGCAT 64281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026047093012660